Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00176 ATGGCGGCTATGTCACCTCACCCTTGTTCTGTCGAGAACAGCATCGCTGGAGCTCAAGAGGAGGCGGAGATGGAGATGGAGACGGAGGCAGCGGCGGTGGGCCCAGATGTGACGAGGCATATTATGGTGAAGTCTTCCCGCTCCACCCAAGTCAGTTTGGAGAAAGCGGTGGTGCTGCGACGGATCCGGCATCGGAAGCGTGTTAACAAGTTCCAGGCGGTGGTTGGAGCTTTGTTCAGCTCACCGTTCGCCGACAAAGCCGACGAGACACCGTTAATACTCAAAGCAGAGGCGGAATGTTCAAAAACATGCAGTCCCAACCACACCCCATACGATTTTCCCTACCCATTCGGCTTCTCCGCCGGCTGCGCAATCCGCTTGGACTGCAATCACGACGGCGCCGCCACGATCGGGGAATTCCCTGTCCAATTAATCAACTCCGACCACATCAAAGTCGTCATCAAAGCCAAATGCAACCGCCGTTTGCACACAATCCGCCAATTCTTCAGCCCCCACTACGCCCCAACGGCCAACAACGCCATTCTTTTACAAAACTGTTCGTCTCCGATTTCGACTTGCCTTTTACCCACCACGATGGTTCAGACCAAATTCGAATCCCCCGATTGCTCTGTTAATCGCACTAGCATAAGCTGCTACACCCAAAACAACACCGCTTCCGCCGCTTTCTTGGACTTCAAAAACCTCACTGGAACCAACTGCGATTACCTTCTCTCGTCCATTTCCGCGGAGGCGCTCAACAGCAACACCTCTGCTGGAATTTCTCTGGAGATTCAGACGGTGGATCTGGGTTGGTGGCTGCAGGGGCCCTGCCGCCGGTCCTGCCATGAAGATGCTAACTGTACGGAGCTTATATCGCCGAGTGACGGGAAGCTGTCTCATCGGTGCCGCTGCCGGGAAGGGTTGGTCGGCGATGGGTATTTGACCGGCACTGGCTGCCGGAAAGCTTCAAATTGCTATGCCACTAAGTTCACTCTCGCCCAATGCGGAACATCAACAACTGCCACAAGAACCGCCGTTCTCGTCGGAACTATAGTCGCCGGAGCCTTCCTCCTCGTTACTCTCCTTTTATTCTGCTGCTTCATCCGCCGTCGTTCCAATCTCAAATCTATTCACCTCAACAAAATCACCAAACGCCGCCTCGCAGAAGCCACAACCGGCGCCGGCGTATCCACCATCCACCTCTACACCTACAAAGAGATTCTAAAAGCTACCCATAACTTCTCTGAGGACTACCGCCTTGGCGCCGGCGCATACGCCTCCGTCTACGTCGGGAAATTACGCGGCGAATGGGTCGCAATTAAACGCCTAAAAAATCGAGACCCCGACACAATCCAACAAGTTTTAAACGAAATCAACCTCATCTCCTCTGTCAGCCACCCTAACCTCGTCCGCCTCCTTGGCTGCTCCATGGAATCAGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTTCCAACATTTACAGAAACAGAGGGGCACCGGCCTCCCCTGGCTTGTCCGCCTCAATATCGCCGTCGAAACCGCTAATGCAATCGCTCATCTCCATTCTGCAATTAACCATCCGATCTTCCACAGAGACATTAAATCCAGTAACATATTACTTGATCATAATCTCAAATCCAAAGTGGCGGATTTCGGGCTTTCGAGATCGGGGATGGCCGAAATTTCCCACATTTCCACGGCGCCTCAAGGAACACCGGGATATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTAGTCCTTGTCGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTCAATTTAGCCGGTCTGGCAGTCGATCGGATCGGGAATGGGCGGCTGAGAGAAATTGTTGACCCGTTAATGGAGATGGAGTTAGACGAATGGGGAAGTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCCTGTCGTTTAATCGTGATGTAAGACCGTCGATGGTAGAGGTGGCGGCGGAGCTGGAGGAGATACGGCGGAGCAGGTGGGATGAAGGGGGAGTTAAGTGTAAGGAAATAGTTGAAAGTGGAAGCTGGAAGTCTAGCCATGGAGGAGGGGATTACTTTTCCAGAGGCTCCGTGGAAGATTCATGGCAGAGTGAACAGAGCTCACCATCTTCTAATAGTTTGTTAAATCAGGTAGTTTAG 2238 53.04 MAAMSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIRHRKRVNKFQAVVGALFSSPFADKADETPLILKAEAECSKTCSPNHTPYDFPYPFGFSAGCAIRLDCNHDGAATIGEFPVQLINSDHIKVVIKAKCNRRLHTIRQFFSPHYAPTANNAILLQNCSSPISTCLLPTTMVQTKFESPDCSVNRTSISCYTQNNTASAAFLDFKNLTGTNCDYLLSSISAEALNSNTSAGISLEIQTVDLGWWLQGPCRRSCHEDANCTELISPSDGKLSHRCRCREGLVGDGYLTGTGCRKASNCYATKFTLAQCGTSTTATRTAVLVGTIVAGAFLLVTLLLFCCFIRRRSNLKSIHLNKITKRRLAEATTGAGVSTIHLYTYKEILKATHNFSEDYRLGAGAYASVYVGKLRGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLFQHLQKQRGTGLPWLVRLNIAVETANAIAHLHSAINHPIFHRDIKSSNILLDHNLKSKVADFGLSRSGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLAGLAVDRIGNGRLREIVDPLMEMELDEWGSSSVEKVGEVAFRCLSFNRDVRPSMVEVAAELEEIRRSRWDEGGVKCKEIVESGSWKSSHGGGDYFSRGSVEDSWQSEQSSPSSNSLLNQVV 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 937808 942089 + Carg11828-RA Car05g00176 148562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00176 745 MobiDBLite consensus disorder prediction 708 745 - -
Car05g00176 745 ProSiteProfiles Protein kinase domain profile. 414 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00176 745 MobiDBLite consensus disorder prediction 723 745 - -
Car05g00176 745 Pfam Protein kinase domain 416 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00176 745 ProSitePatterns Protein kinases ATP-binding region signature. 420 441 IPR017441 GO:0005524
Car05g00176 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00176 - - - csv:101218893 1107.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00176 Car12g00472 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00176 Car-Chr5:937808 Car08g00988 Car-Chr8:6684453 6.76E-89 dispersed
Car08g00145 Car-Chr8:867358 Car05g00176 Car-Chr5:937808 9.26E-52 dispersed
Car12g00473 Car-Chr12:2968398 Car05g00176 Car-Chr5:937808 5.78E-24 transposed
Car12g00472 Car-Chr12:2964459 Car05g00176 Car-Chr5:937808 0 wgd
Car03g00914 Car-Chr3:7211307 Car05g00176 Car-Chr5:937808 0 wgd
Car05g00176 Car-Chr5:937808 Car07g00722 Car-Chr7:3720077 4.56E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88872 PF00069 Pkinase 6.00E-40 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00176 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 21.549421 15.446754 23.07538 0.0 0.0 0.0