Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00179 | ATGTTCGAACCACCACCACCTCCGCCGCCGCCCTCCCTTCTCTTCCTTTTCTTCTTCTTCTTCTTCTTCTTCATTTCATCCATAACCGCCGCCGATGCCATTGCTGTATTCAAGGAGGCCCCCCAATTCTATAACTCCCCGGACTGCCCCTTGGTCGTCACTGGCGAGGAAAACGGTAACCGACTTTGCTCATACGACGGCATCCACGTGGCGATGACATTGGACACCGCATACATCCGAGGGTCCATGGCGGCCGTCCTCTCCGTTCTGCAACATTCCACCTGCCCCCAAAATGTAATATTCCATTTCGTTTCCTCTGCCTCTGCAAACGCGTCGGATCTACGCGCCACCATTTCCTCCTCCTTCCCATACCTGAAATTCCAAATCTACCCGTTCGACGACGACGCCGTGTCTCGTCTGATCTCCACCTCCATCCGATCGGCTCTGGATTGCCCTCTGAATTACGCGCGTAGTTACTTGGCCGACCTCCTTCCTCTCTGTGTCCGTCGTGTCGTCTATCTCGATTCAGATCTAATCCTCGTCGACGACATCGCGAATCTCGCTAATACCCCTCTAAACGATGCCGTATTAGCCGCCCCGGAGTACTGCAACGCCAATTTCACCTACTATTTCACTCCCACATTCTGGTCCAATCCCTCTCTGTCTCTCACCTTCGCCAATCGCAACCCCTGTTATTTCAACACCGGCGTCATGGTCATCGACCTCGCCCGGTGGCGCCTCGGCGATTTCACCTCAAAAATCGAGGAATGGATGGAGCTTCAGAAGCGGATAAGGATCTACGAGCTGGGATCTCTGCCGCCATTCATGCTCGTTTTCGCCGGAAACATTGCCCCCGTGGACCACCGCTGGAACCAACACGGTCTCGGCGGTGACAATTTCCGGGGACTCTGTCGAGATCTACACCCCGGTCCAGTGAGCCTTCTGCATTGGAGCGGAAAGGGGAAGCCATGGGCCCGGCTCGATGCGAACCGGCCGTGTCCATTGGATGCTTTGTGGGTCCCTTATGATCTGTTGCAAACTCCATTTTCATTGGAGTCTTGA | 1062 | 54.8 | MFEPPPPPPPPSLLFLFFFFFFFFISSITAADAIAVFKEAPQFYNSPDCPLVVTGEENGNRLCSYDGIHVAMTLDTAYIRGSMAAVLSVLQHSTCPQNVIFHFVSSASANASDLRATISSSFPYLKFQIYPFDDDAVSRLISTSIRSALDCPLNYARSYLADLLPLCVRRVVYLDSDLILVDDIANLANTPLNDAVLAAPEYCNANFTYYFTPTFWSNPSLSLTFANRNPCYFNTGVMVIDLARWRLGDFTSKIEEWMELQKRIRIYELGSLPPFMLVFAGNIAPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWVPYDLLQTPFSLES | 353 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 954364 | 955425 | - | Carg11824-RA | Car05g00179 | 148565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00179 | 353 | Pfam | Glycosyl transferase family 8 | 69 | 326 | IPR002495 | GO:0016757 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00179 | Car12g00466 | CCT | |
| Car01g01471 | Car05g00179 | CCT | |
| Car05g00179 | Car12g00466 | ECH | |
| Car01g01471 | Car05g00179 | ECH | |
| Car05g00179 | Car09g00157 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00179 | Car-Chr5:954364 | Car17g01007 | Car-Chr17:8010674 | 1.32E-137 | dispersed | |
| Car14g00839 | Car-Chr14:4956083 | Car05g00179 | Car-Chr5:954364 | 1.29E-134 | dispersed | |
| Car17g01087 | Car-Chr17:8435851 | Car05g00179 | Car-Chr5:954364 | 1.00E-140 | dispersed | |
| Car01g01471 | Car-Chr1:12580917 | Car05g00179 | Car-Chr5:954364 | 0 | wgd | |
| Car12g00466 | Car-Chr12:2941124 | Car05g00179 | Car-Chr5:954364 | 0 | wgd | |
| Car03g00925 | Car-Chr3:7268186 | Car05g00179 | Car-Chr5:954364 | 0 | wgd | |
| Car05g00179 | Car-Chr5:954364 | Car07g00738 | Car-Chr7:3808565 | 0 | wgd | |
| Car05g00179 | Car-Chr5:954364 | Car09g00157 | Car-Chr9:747771 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00179 | K20893 | - | csv:101218422 | 631.328 |