Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00180 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACCGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTGCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCAAATCCTTTTCCCCACAATGGGTTTGGATTCATGGGAGGTCTTGGCGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 46.75 MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 958231 958923 - Carg11823-RA Car05g00180 148566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00180 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Car05g00180 230 MobiDBLite consensus disorder prediction 1 20 - -
Car05g00180 230 CDD RING-HC_AtRMA_like 28 72 - -
Car05g00180 230 MobiDBLite consensus disorder prediction 84 122 - -
Car05g00180 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Car05g00180 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Car05g00180 230 SUPERFAMILY RING/U-box 26 83 - -
Car05g00180 230 PANTHER OS12G0636000 PROTEIN 2 230 - -
Car05g00180 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car05g00180 230 SMART ring_2 30 70 IPR001841 -
Car05g00180 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 84 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00180 Car-Chr5:958231 Car12g00466 Car-Chr12:2941124 4.09E-124 dispersed
Car20g00169 Car-Chr20:925007 Car05g00180 Car-Chr5:958231 9.92E-26 dispersed
Car03g00926 Car-Chr3:7272959 Car05g00180 Car-Chr5:958231 4.70E-79 wgd
Car05g00180 Car-Chr5:958231 Car07g00739 Car-Chr7:3812415 2.96E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00180 K10666 - csv:101221027 412.535