Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00183 ATGGCTTCTCCATTATGTGTTTTTCTTCTATTGGTCGTGTTTTCACTTGGAAATGTCGCTTTTGCGACTGTTTTTACGCTTCAGAATCATTGCAGCTACACGCTATGGCCGGGAACGCTCTCCGGCAATGGTGCGGCGGTTCTTGGCGACGGCGGTTTCCCTCTGGCCCCTGGTGCTTCTGTACAACTGACGGCTCCGAACGGCTGGTCTGGTCGGTTCTGGGCACGAACTGGCTGCGACTTCGACAGCTCCGGCAATGGGAAATGCCAGACGGGTAACTGCGGCGGCGCACTTAAATGCATCGGCGGTGGCGAGCCGCCAGTCACACTGGCGGAATTCACCATTGGCTCAACCAGTGGCGAAATGGATTTTTACGACATTAGCCTCGTCGACGGCTACAATGTGGGCATCGGCGTCCGGGCAAGCGGCGGTACCGGCAACTGCCAGTACGCCGGCTGCGTTACGGACTTGAACAGAATCTGCCCATCGGAATTGCAAGTGACTGATTCGGGCTCCGTCGTGGCCTGCAGGAGCGCCTGCGCCGCCTTCATGAAGCCAGAATTCTGCTGCACCGATGACCACTCGACACCGCAGACATGCCCACCAACATCTTACTCACAAATGTTCAAGAACGCATGTCCGTCAGCGTACAGCTACGCATACGACGACGCTTCGAGCACTTGCACATGTAAGGGATCGGACTACGTCATTAGCTTTTGCCCGTCCGGTTGA 732 56.42 MASPLCVFLLLVVFSLGNVAFATVFTLQNHCSYTLWPGTLSGNGAAVLGDGGFPLAPGASVQLTAPNGWSGRFWARTGCDFDSSGNGKCQTGNCGGALKCIGGGEPPVTLAEFTIGSTSGEMDFYDISLVDGYNVGIGVRASGGTGNCQYAGCVTDLNRICPSELQVTDSGSVVACRSACAAFMKPEFCCTDDHSTPQTCPPTSYSQMFKNACPSAYSYAYDDASSTCTCKGSDYVISFCPSG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 965515 966469 + Carg11820-RA Car05g00183 148569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00183 243 ProSiteProfiles Thaumatin family profile. 22 243 IPR001938 -
Car05g00183 243 Pfam Thaumatin family 29 241 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00183 - - - csv:101217945 444.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00183 Car-Chr5:965515 Car13g00828 Car-Chr13:8984635 2.28E-83 dispersed
Car16g00335 Car-Chr16:2049856 Car05g00183 Car-Chr5:965515 2.75E-69 dispersed
Car20g00665 Car-Chr20:3747654 Car05g00183 Car-Chr5:965515 6.15E-41 dispersed
Car05g00183 Car-Chr5:965515 Car18g00061 Car-Chr18:309546 2.28E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00183 Car_Chr05 FPKM 0.309234 0.26856 1.044818 0.975936 7.507349 7.649165 7.882777 0.0 0.0 0.0