Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00188 ATGTCCTGGAATCATTCTAGGTCATTCCAGGACCTTCTGCTTTTCCGTTCCGAAGCTGCGACGGGGTGTGGTCTGGACCGTGAAGCGGTCGGCTTACTGTTCGGCCGGTTCACATTTTCCAGTTCGGTCCGTCGTCGGGCGTTGATAGGAAGGATCTGTGAAACAGTGAGAGTTCTGAAAATGGAGGACCGCTTAGCGAGGATGTTATCTATGGAGTATGCCAAAGCCGGGTTGCTGCACGTTTGCTCGAGAGATGAATCCCAAATACCATTTTTAGGAATCACGACGCTTCGCAATCACACAAGCCATGGGGGTGGGGTTATGGCCTTGAATTCGAGTAATGGGTCATTTTCCAAAGCCATATGGGGGGCGCCCACATGCTTTGATCTTTTGCCTAGCATGGGCATCTACCCGTTTTCCATTTCCTGCGGGATTCTCGCTGCGGAAAACCGGAAGATGACCTCCGACGGCGCCACTTCTGCCACCATTAGCCGGCGGAAGCCGTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAACGACGAAGGAGAGCCATCGCGGCTAAGATCTACGCTGGCCTTAGGGCTCAAGGCAACTTCAATTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGATGCTGGTTGGACCGTCGAAGACGACGGAACCACCTATCGGAAGGGATGCAGGCCGCCCCCAATCGATATCGTCGGCAGTTCCACCAGAGCCACCCCCTACACATCTCAAAATCCAAGCCCATTGTCTTCTTCATTTCCTAGTCCAATGGCATCCTATCAAGTCAGTCCCTCCTCCTCCTCCTTCCCGAGCCCGTCCCGTTTGGACGCCAACCATCCATCAAACCTCATTCCATATCTTCGCCAAGCGATTCCCAAATCACTACCTGGTCTTAGAATCTCAAACAGTGCTCCCGTGACGCCTCCTCTTTCATCCCCTGCCTCAAATTGGGAGGTCACGGCTAAAGAATCCTTGTCCTTGTTGAATTACCCTTTCTTTGCAGTATCCGCCCCAGCTAGCCCGACACGCCCTCAGCTGCTGCATACTCCCGCCACGATCCACGAATGCGATGAGTCTGAATCATCCACCAATGACTCCAATCAGTGGGCACGTCTCCGTGCCTGTGCACCAACTTCTCCCACCTTCAACCTTATGAAATCTGCTGATCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGAAGAGGAAACGAATTTGAGTTCTTGGGCTGTAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTTGGATTGGAGGATTTAGAGCTCACACTTGGTAGCGAACAAAATCAGAATCTCCAAAACGACGTCGTTGGATACTCATCTCTCAAATTAATCTCCAATCTCCGGTCAATTTGGAGGAAACAGAAACTTCCCGCCGCTAGCACCGCCATGGCTTCCAAAGCTCCCCCCTCCTCTACCGAGAAACAAAGAGACTTCTTCAATCACCTCGAAGCTTACCTCGCAAAGAGAGACGGCGTCGACAAGCTCTTGAAAATCTCCAGGTACGCCACCAAGATCATCCTCTCCTCCTCCGCTCTTCCCGAATCCCTTCCTCTAACGCACCGTCTCAAGAGCTTCGAATCCAGCGTCGGCGTCAGTCGCAAAGCCTTCCGTCTCGGCAAGTTCATCCAAGACCTAAACGCCTTGAGAAATTCGCATTTCGAATCTAGCCAACAACTTCTGCTCGCTCTCGTTGCCTATGGCGGAGAGGGATTTTATTACTTTATCGAACAGTTCATTTGGTTGGCTAAATCTGGTTTAATTGACAAACGGCACTCGAATCACTTGCAGAAGATCAGCGCATGGGCGGAATTAATCGGCTATATCGGGAGTATTTCGTTGAAAATTAGGGATTTGAAACGGATTCTCGAAGACGAGGCGTGTTTGAAAGCGAGTATTGAGATTGCAGTTACCAGAGGAGATAAACATCGGGAAGAGGAAGAGAAGATGAAGAAATTGCAAACGAAAAAGCTGATGAAGAAGCTTTCGATTGTTCAAGATTTTGCCGATGGATTCATGGCGGCGGCGGACATTCGCGATGGGAATGGCCGGCTTTCAGGTCCTCTTCCAATTTCTTGGGCTGGGCTTATCTCGGCATTGATTAGCACTCATAAGAACTGGATATCATGCTGA 2193 50.52 MSWNHSRSFQDLLLFRSEAATGCGLDREAVGLLFGRFTFSSSVRRRALIGRICETVRVLKMEDRLARMLSMEYAKAGLLHVCSRDESQIPFLGITTLRNHTSHGGGVMALNSSNGSFSKAIWGAPTCFDLLPSMGIYPFSISCGILAAENRKMTSDGATSATISRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCRPPPIDIVGSSTRATPYTSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANHPSNLIPYLRQAIPKSLPGLRISNSAPVTPPLSSPASNWEVTAKESLSLLNYPFFAVSAPASPTRPQLLHTPATIHECDESESSTNDSNQWARLRACAPTSPTFNLMKSADQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSEQNQNLQNDVVGYSSLKLISNLRSIWRKQKLPAASTAMASKAPPSSTEKQRDFFNHLEAYLAKRDGVDKLLKISRYATKIILSSSALPESLPLTHRLKSFESSVGVSRKAFRLGKFIQDLNALRNSHFESSQQLLLALVAYGGEGFYYFIEQFIWLAKSGLIDKRHSNHLQKISAWAELIGYIGSISLKIRDLKRILEDEACLKASIEIAVTRGDKHREEEEKMKKLQTKKLMKKLSIVQDFADGFMAAADIRDGNGRLSGPLPISWAGLISALISTHKNWISC 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 988134 994005 + Carg11815-RA Car05g00188 148574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00188 730 Pfam Peroxisomal biogenesis factor 11 (PEX11) 501 727 IPR008733 GO:0005779|GO:0016559
Car05g00188 730 MobiDBLite consensus disorder prediction 245 285 - -
Car05g00188 730 MobiDBLite consensus disorder prediction 166 180 - -
Car05g00188 730 Pfam BES1/BZR1 plant transcription factor, N-terminal 164 288 IPR008540 -
Car05g00188 730 MobiDBLite consensus disorder prediction 156 180 - -
Car05g00188 730 MobiDBLite consensus disorder prediction 234 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00188 Car12g00459 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00188 Car-Chr5:988134 Car12g00460 Car-Chr12:2902675 5.51E-154 dispersed
Car04g00314 Car-Chr4:1749767 Car05g00188 Car-Chr5:988134 4.06E-29 transposed
Car06g00945 Car-Chr6:7293047 Car05g00188 Car-Chr5:988134 5.49E-07 transposed
Car08g00811 Car-Chr8:5447584 Car05g00188 Car-Chr5:988134 3.92E-08 transposed
Car12g00459 Car-Chr12:2896964 Car05g00188 Car-Chr5:988134 7.21E-135 wgd
Car03g00704 Car-Chr3:6143695 Car05g00188 Car-Chr5:988134 4.03E-84 wgd
Car05g00188 Car-Chr5:988134 Car07g00444 Car-Chr7:2261078 1.06E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3528 PF05648 PEX11 9.40E-44 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00188 K14503 - csv:101219853 461.84