Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00188 ATGTCCTGGAATCATTCTAGGTCATTCCAGGACCTTCTGCTTTTCCGTTCCGAAGCTGCGACGGGGTGTGGTCTGGACCGTGAAGCGGTCGGCTTACTGTTCGGCCGGTTCACATTTTCCAGTTCGGTCCGTCGTCGGGCGTTGATAGGAAGGATCTGTGAAACAGTGAGAGTTCTGAAAATGGAGGACCGCTTAGCGAGGATGTTATCTATGGAGTATGCCAAAGCCGGGTTGCTGCACGTTTGCTCGAGAGATGAATCCCAAATACCATTTTTAGGAATCACGACGCTTCGCAATCACACAAGCCATGGGGGTGGGGTTATGGCCTTGAATTCGAGTAATGGGTCATTTTCCAAAGCCATATGGGGGGCGCCCACATGCTTTGATCTTTTGCCTAGCATGGGCATCTACCCGTTTTCCATTTCCTGCGGGATTCTCGCTGCGGAAAACCGGAAGATGACCTCCGACGGCGCCACTTCTGCCACCATTAGCCGGCGGAAGCCGTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAACGACGAAGGAGAGCCATCGCGGCTAAGATCTACGCTGGCCTTAGGGCTCAAGGCAACTTCAATTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGATGCTGGTTGGACCGTCGAAGACGACGGAACCACCTATCGGAAGGGATGCAGGCCGCCCCCAATCGATATCGTCGGCAGTTCCACCAGAGCCACCCCCTACACATCTCAAAATCCAAGCCCATTGTCTTCTTCATTTCCTAGTCCAATGGCATCCTATCAAGTCAGTCCCTCCTCCTCCTCCTTCCCGAGCCCGTCCCGTTTGGACGCCAACCATCCATCAAACCTCATTCCATATCTTCGCCAAGCGATTCCCAAATCACTACCTGGTCTTAGAATCTCAAACAGTGCTCCCGTGACGCCTCCTCTTTCATCCCCTGCCTCAAATTGGGAGGTCACGGCTAAAGAATCCTTGTCCTTGTTGAATTACCCTTTCTTTGCAGTATCCGCCCCAGCTAGCCCGACACGCCCTCAGCTGCTGCATACTCCCGCCACGATCCACGAATGCGATGAGTCTGAATCATCCACCAATGACTCCAATCAGTGGGCACGTCTCCGTGCCTGTGCACCAACTTCTCCCACCTTCAACCTTATGAAATCTGCTGATCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGAAGAGGAAACGAATTTGAGTTCTTGGGCTGTAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTTGGATTGGAGGATTTAGAGCTCACACTTGGTAGCGAACAAAATCAGAATCTCCAAAACGACGTCGTTGGATACTCATCTCTCAAATTAATCTCCAATCTCCGGTCAATTTGGAGGAAACAGAAACTTCCCGCCGCTAGCACCGCCATGGCTTCCAAAGCTCCCCCCTCCTCTACCGAGAAACAAAGAGACTTCTTCAATCACCTCGAAGCTTACCTCGCAAAGAGAGACGGCGTCGACAAGCTCTTGAAAATCTCCAGGTACGCCACCAAGATCATCCTCTCCTCCTCCGCTCTTCCCGAATCCCTTCCTCTAACGCACCGTCTCAAGAGCTTCGAATCCAGCGTCGGCGTCAGTCGCAAAGCCTTCCGTCTCGGCAAGTTCATCCAAGACCTAAACGCCTTGAGAAATTCGCATTTCGAATCTAGCCAACAACTTCTGCTCGCTCTCGTTGCCTATGGCGGAGAGGGATTTTATTACTTTATCGAACAGTTCATTTGGTTGGCTAAATCTGGTTTAATTGACAAACGGCACTCGAATCACTTGCAGAAGATCAGCGCATGGGCGGAATTAATCGGCTATATCGGGAGTATTTCGTTGAAAATTAGGGATTTGAAACGGATTCTCGAAGACGAGGCGTGTTTGAAAGCGAGTATTGAGATTGCAGTTACCAGAGGAGATAAACATCGGGAAGAGGAAGAGAAGATGAAGAAATTGCAAACGAAAAAGCTGATGAAGAAGCTTTCGATTGTTCAAGATTTTGCCGATGGATTCATGGCGGCGGCGGACATTCGCGATGGGAATGGCCGGCTTTCAGGTCCTCTTCCAATTTCTTGGGCTGGGCTTATCTCGGCATTGATTAGCACTCATAAGAACTGGATATCATGCTGA 2193 50.52 MSWNHSRSFQDLLLFRSEAATGCGLDREAVGLLFGRFTFSSSVRRRALIGRICETVRVLKMEDRLARMLSMEYAKAGLLHVCSRDESQIPFLGITTLRNHTSHGGGVMALNSSNGSFSKAIWGAPTCFDLLPSMGIYPFSISCGILAAENRKMTSDGATSATISRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCRPPPIDIVGSSTRATPYTSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANHPSNLIPYLRQAIPKSLPGLRISNSAPVTPPLSSPASNWEVTAKESLSLLNYPFFAVSAPASPTRPQLLHTPATIHECDESESSTNDSNQWARLRACAPTSPTFNLMKSADQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSEQNQNLQNDVVGYSSLKLISNLRSIWRKQKLPAASTAMASKAPPSSTEKQRDFFNHLEAYLAKRDGVDKLLKISRYATKIILSSSALPESLPLTHRLKSFESSVGVSRKAFRLGKFIQDLNALRNSHFESSQQLLLALVAYGGEGFYYFIEQFIWLAKSGLIDKRHSNHLQKISAWAELIGYIGSISLKIRDLKRILEDEACLKASIEIAVTRGDKHREEEEKMKKLQTKKLMKKLSIVQDFADGFMAAADIRDGNGRLSGPLPISWAGLISALISTHKNWISC 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 988134 994005 + Carg11815-RA Car05g00188 148574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00188 730 Pfam Peroxisomal biogenesis factor 11 (PEX11) 501 727 IPR008733 GO:0005779|GO:0016559
Car05g00188 730 MobiDBLite consensus disorder prediction 245 285 - -
Car05g00188 730 MobiDBLite consensus disorder prediction 166 180 - -
Car05g00188 730 Pfam BES1/BZR1 plant transcription factor, N-terminal 164 288 IPR008540 -
Car05g00188 730 MobiDBLite consensus disorder prediction 156 180 - -
Car05g00188 730 MobiDBLite consensus disorder prediction 234 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00188 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101219853 461.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00188 Car12g00459 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00188 Car-Chr5:988134 Car12g00460 Car-Chr12:2902675 5.51E-154 dispersed
Car04g00314 Car-Chr4:1749767 Car05g00188 Car-Chr5:988134 4.06E-29 transposed
Car06g00945 Car-Chr6:7293047 Car05g00188 Car-Chr5:988134 5.49E-07 transposed
Car08g00811 Car-Chr8:5447584 Car05g00188 Car-Chr5:988134 3.92E-08 transposed
Car12g00459 Car-Chr12:2896964 Car05g00188 Car-Chr5:988134 7.21E-135 wgd
Car03g00704 Car-Chr3:6143695 Car05g00188 Car-Chr5:988134 4.03E-84 wgd
Car05g00188 Car-Chr5:988134 Car07g00444 Car-Chr7:2261078 1.06E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g901 . . . . . . . . . Cmo12g00434 . . . Car12g00459 Sed02g1607 . Cpe07g00437 Bhi04g00270 Tan02g1939 Cmetu06g0284 . Hepe10g0662 . Lcy13g2003 Cla08g01509 Cam08g1998 Cec08g1573 Cco08g1710 Clacu08g1688 . Cre08g1471 . . . . . . . Cme03g01974 Blo17g00812 . Bda08g01296 . . . . . . . . Cma12g00488 Cma05g00226 Car05g00188 . . . . . . . . . . . . . . . . . Lsi08g01413 . Chy03g01480 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00460 . 1 306 BZR Transcription Factor Family AT1G75080 59.5 2.8e-82 302.8
Car07g00444 CST 33 323 BZR Transcription Factor Family AT1G75080 58.6 8.4e-79 291.2
Car03g00704 CST 28 318 BZR Transcription Factor Family AT1G75080 58.4 1.9e-78 290.0
Car05g00188 CCT 185 446 BZR Transcription Factor Family AT1G75080 60.7 1.3e-76 283.9
Car12g00460 . 1 306 BZR Transcription Factor Family AT1G19350 57.6 4.5e-80 295.4
Car07g00444 CST 33 321 BZR Transcription Factor Family AT1G19350 59.6 3.2e-78 289.3
Car03g00704 CST 28 317 BZR Transcription Factor Family AT1G19350 59.2 5.4e-78 288.5
Car05g00188 CCT 185 446 BZR Transcription Factor Family AT1G19350 60.7 1.3e-76 283.9
Car07g00444 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 1.4e-76 283.5
Car03g00704 CST 6 313 BZR Transcription Factor Family AT3G50750 57.7 1.9e-76 283.1
Car05g00188 CCT 153 445 BZR Transcription Factor Family AT3G50750 50.2 2.0e-57 219.9
Car04g00615 . 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.9e-49 193.0
Car18g00409 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.3e-48 190.3
Car16g00394 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 4.8e-48 188.3
Car04g00615 . 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.2e-117 420.2
Car16g00394 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 3.2e-115 412.1
Car18g00409 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 2.8e-103 372.5
Car13g00463 CST 1 342 BZR Transcription Factor Family AT1G78700 65.5 3.6e-103 372.1
Car03g00704 CST 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.0e-63 240.7
Car07g00444 CST 33 204 BZR Transcription Factor Family AT4G36780 76.3 6.2e-61 231.5
Car05g00188 CCT 185 349 BZR Transcription Factor Family AT4G36780 57.6 2.6e-38 156.4
Car12g00460 . 33 204 BZR Transcription Factor Family AT4G36780 56.7 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004435 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3528 PF05648 PEX11 9.40E-44 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00188 Car_Chr05 FPKM 3.999495 4.149932 3.522409 3.43457 2.086744 3.021894 1.543995 0.108304 0.0 0.0