Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00192 ATGGCCAGAAGCTTCAAGCTCAAAGTCCGTCTCTTCATCTCCTCTTTCCGATTCTGCCGCCCCAAACATCCACACCCTTTAACTTTCCCCATAACCCCTTCGCCGGAAAATTTCCACTACGAGAAGCAATTGCCGGCCAACCCCAATTCCTGCTTCAGCTGTTACCACAATCCACCATCGCCACCGCCATCAACACCAGTGGGTTTCTTCGCCGATTTTTCAACAGAAGAGTCCACATCAGTCTGCATCAGCTGCAAATTGAAATCATACGCTCAGGCAAACGGACTAATGCAAGTGAAAGAAAACAGAGCCGAAACAGAGCATGAAATTTCAGGCGAGGAGAATCGGCGTTCCCCGTTTTCCTGGATAACCAGAAAGAAGTGGAAGATGAAGAAATCAAAGAAAACGGAGCTTAAAAGCAAGGCATTCGTGGCAAAGCACAAGTCGTATGGGTACGAGGGAGAGGAAGGCGAAGGAACAGAGGCATTGTTGAACTCTTCCATTAGTTTCTCCTCCAATGGATCGCCGGTGAAGAGAAGTGAAATCGCGTCGTGTCCAAGTCAAGTGGAATGGAAAATGGGGGAGAGCTTAGTGCAGGTCAAGAGATCGAAGGAACCACAAGAAGATTTCAAGAGGTCAATGGTACAGATGATATTGGAGAAGGAGATTTTTGAGGCGAAGGGATTGGAGGACCTTTTGCAGTGTTATTTGGCGTTGAACTCGCGGGAGCATCATGGGATTATAGTTGGAGCTTTTTCCGAGGTTTGGGAGTTTCTGTTCTACCATTCCCACTCAAACAAGTGA 804 47.51 MARSFKLKVRLFISSFRFCRPKHPHPLTFPITPSPENFHYEKQLPANPNSCFSCYHNPPSPPPSTPVGFFADFSTEESTSVCISCKLKSYAQANGLMQVKENRAETEHEISGEENRRSPFSWITRKKWKMKKSKKTELKSKAFVAKHKSYGYEGEEGEGTEALLNSSISFSSNGSPVKRSEIASCPSQVEWKMGESLVQVKRSKEPQEDFKRSMVQMILEKEIFEAKGLEDLLQCYLALNSREHHGIIVGAFSEVWEFLFYHSHSNK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1009236 1010039 - Carg11811-RA Car05g00192 148578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00192 267 Coils Coil 96 116 - -
Car05g00192 267 ProSiteProfiles OVATE domain profile. 199 258 IPR006458 -
Car05g00192 267 Pfam Transcriptional repressor, ovate 203 259 IPR006458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00192 - - - cpep:111805471 473.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00192 Car-Chr5:1009236 Car07g00818 Car-Chr7:4334912 4.43E-19 dispersed
Car05g00192 Car-Chr5:1009236 Car10g00570 Car-Chr10:2886216 3.61E-19 transposed
Car05g00192 Car-Chr5:1009236 Car11g00487 Car-Chr11:2653863 3.01E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g926 . . . . . . . . . . . . . . Sed07g1696 . . Bhi04g00262 Tan02g1946 Cmetu03g1824 . Hepe10g0654 . Lcy13g1997 Cla08g01501 Cam08g1991 Cec08g1566 Cco08g1703 Clacu08g1681 . Cre08g1464 Cone4ag1902 Cone7ag1816 Cone17ag1333 . . . . Cme03g01968 . . . . . . . . . . . . . Car05g00192 . Cpe11g00192 . . . . . . . . . . . . . . . Lsi08g01406 Csa02g02040 Chy03g01473 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014328 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3529 PF04844 Ovate 4.10E-24 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00192 Car_Chr05 FPKM 5.86758 4.788839 5.561009 9.472564 2.929248 5.225676 3.757358 3.541217 2.650849 1.74005