Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00194 ATGGCCGGCCGCTTCGACTTTGGTTCTCGCCCCAATCTCTCTGTCTCCAGTCCGCTCCATGCTGCCAATGATGTTCAGGGGTCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAACCAGGGGAGAGTAAGCATGGAATGGGAACTGGGGAAAACAATTTCAGTCATCAACCTGTTTATGGAAACCGCATGGACACGATGAAGGGATCAGAGAATTCTGAGGATATGAATGAAATACAAAAGAAAAAAGAAATTTTTAGGCCATCCTTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGACGAGGAAAGAGAAAATAGTTCTTCAGTGCGTAAGGATCGTTGGAGGGATGGTGAGAAAGAGATAGGTGATGGTCGTAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGAGAATCTCGCCGAGGCCCATCGGAACGCTGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAATACGCGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCACCTTGACAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACAGGGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCCCCTCATCATCAAACCCAAACTCCAATCAAACAAGTTCCTGCATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTCCCAATAGTATTTATTCATCTCCACATTCTCTTGGAGCTTCCTCCGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAGTCTGACATCACAGCAAACTTTAAAAGATGGATTTGTGCCCGTGCCTACTCTTACGCTGGATGAACCGTTGGAGCCTCTTGCTCTTTGTGTGCCAACTACTGAAGAAATGGCTTTCTTGAAAGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAGGTGTCAAAGGATGGTCGAAACTCATCAGAATTTATGCAGACTAGACGAACAAAACTTGGTGTTTCACCTTCCCTAGGCAGTAGAGAGGATTTACCTCATGGCTTTGATGATTGCAATGATGATAAGGATGATAGCACCACTAAACCTGGTCACACAAACTATTCAGAGGTCACTACCGAGAGGCAGTTGCCATATCATAGGCCCCTGGCACATGCTAGTAGCACCTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGAAAAGCAGATGAGGGGCCTGTCAGTAGGGAATCTAGTGTTAAGGGGGGTACCAATGTTCAACACGGCCGTACATGGGATGCCTCCTCATCACTTGAGCAACTCCTGAATACATCCTTACCTGATTGGAGAGACAATCCTAATAATATCAACTCAGGAACTCCTGACAAGGGACTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAACTCAGCCACTCCATCTTATCCGAAGGAGAATCCCAAATGGCATACCGGGGACGAATCCATCCTTAGAAGGCAGCTTTCAGGGATTTTGGACAAGGAACAACTAGCAAGGAAAACTGTTCAATCTGCTCCAGAGGATTTGCAATTCCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCTGGCAAATGCACCAAATGACTTGCCATTTTCAGCACTTGGTGATGCCATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTTGTGGACCAAAGCAGAATGAATTCGCAGATACTTTAGGTAACGCCAGTATTGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATCCTTTGAGGAATGAGACAAGGCATAAACATGGCTCAACGGTTGAAGCTGAAAACAGATTTCTGGAGTCACTTATGTCTGGTAATATAGGTTCTTCACCTCTGGAGAAGAGTGCCTTTTCTGAAGGCTTGCCAGGATATTTTGGAAATAATTCTAATAATTTGCCTTCGTTGGGAATAGACAATGGAAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAGCGGCAAAGGTCTTTGTCCAATCCTTATGCATTTTGGCCTGGTATAGATGCTTCATCCAAGGTATCTAAGCCAGATATTGGCCTAGATGATCCAATTCAGCAAGCCAAACTTTTATCTTCAATAATAGACCATTCTCGCCAAACTTCTCATCCTCAAAGTGCTGATATGTCGGCCATTCTGCAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGACGTTGCTGGCTGGTCAAAATTTGCTTCGCAGTGTGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTACAACCTCAGCCGCCGTTGACAAATTTGCTTGCTCAAGCTACTGATAATTCTACCTTAACTCCAGATAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACCTGTTGCAGTTGCATTCGCAAGTGCCTTTCTCTGCACAACAAATGTCATTGTTGGACAAAATTTTATTACTTAAGCAGCAGCAAAAACAAGAGGAGCAACAACAGTTATTACAGCAGCAGCAGCAGTTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACGTCAGCATTTTGTCGATCCATCTTTTGGACAGTTACACGGCGCTCCTATACCTATTGGAAATGCATCTAATGATCCCTCTCAAGTCCAGCTATCACGAGAGAAGTTTCAGATTGGTTCACAAAAGCCCTTAAATGTACTAACTGATCATGCAACTACCTACGGAAATATGGCTCTGCAAGCTACCCAAGGAGCCAGTTACAATGTTAATTCAGAAGATCCGTCCCTTATTCTTCCACCTCACATGTTTGGAAATGTTGTTCAGCAGCAGAAGAGTTGGACTGCTGCTATCCCTGAGCAGCTTAATGATACTCGTCCGAAAGATGTTATACCTGGATCTAATGTTGTTGAGGGCTCACTTTTGCCTGGGATGTCTAGCAAATCAAACGAGGATGTGAATCTTGTACCGAAGTCATCTGATAGCCACACTATTATTAAAACTTCGGAAAAAATATCGGAGGATGTACCAAGGCTTGATGCAACGGTCACATCTTTTGCATCTGTTGATGCTACTGTGGAACCTCTTCCTCTCAAGAACGCTGAAATCTCAGTTGCTATACCACCACCAGCAGTTCATAATATTGAAATTTCCGTTCCCGACAGTGTACCTGCTGTGAAGGGTCAAGAAGCTAGTATGCCTATGGAAAAGCTGGCAAGGGATGGAAGCAGAGATGAAACCTCCTTGGAGGCAGAAGTGAAAAATGTTGAGGTACAAGAACCTAGAAAATCTTCTGATAAAAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTGTCCTATGACCAGGCCAAGGACTCTAAGAATTCTGGTATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGTCAGATAATATTGTGGGAAAATCAAGTGACACGGCTTGCTCTCCTCGGAAGATGAGAGATGGGGATAGCAAAATTGCCATTGTGGATAGTCAGCTAGATCAAAGCTCTGCCTCTGCTGTAAATTCCTGGAACGATGGTGAAATTGTTCAAGTGAGGGATGAGTCCAGACTAATTGGGTCTGATTCTGTGCTTAATTCACAAACTCAATCTAGTCAAAGAGCTTGGAAAATTGCTTCGAATTTCAAGCCAAAGTCTTTATTGGAGATTCAGGAGGAAGAGCAGAAAATGGCACATACAGAAACTGTTGTATCAGACATTTCAACTTCTATCAACACAATGAGTTTATCAACTCCTTGGGCTGGAATCGTCAGCAGTTCAGACCCAAAAGCTTCCAGAGAAATTCATAAAGATTCTGTGAATTCAGAATCAAGTGAGAAACATGAAAATTTATTGACTTCAAGAAGTAGAAAGAGCCAATTGCATGATCTGCTGGCGGAAGATGATATGGAAAAGTCTGGTGCAGGTGATGTTCGTGTTTCTGACACTGTTCAGATTGCTTCTTCTCCTCAGGTCATGGCCGTGCGAGCAGAACCTATGGATGAAAATTTTATTGAGGCAAAAGACACAAAAAAGAGCCGCAAGAAGTCTGCTAAGGCTAAGGGTATTGGTACCAAGGCCTCCTCTGCAGTCCCTTCTGCTGATGTGCCTGTTGGTTTAAGTCCCGTTGAGAAGGGGAAAATCTCCCGCCAGACGCAGCAAGAGAAGGAAGCGATGCCCGCCATTCCTTCTGGGCCTTCTTTTGGTGATTTTGTTCTGTGGAAGGGAGAAGTTGCTAATGTGGCCCCTGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTCGCCAAACCCACATCTTTGAGGGATATTCAGATGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATTCTCAACAAATCTCTACTCCCCAAAAGGCTCAGCCTACTCAGGTTGGTCGTAGCAGCCGCACTACTCCTCCTTCCTGGTCTCTCTCTGCATCTTCCCCATCGAAGGCTGCATCATCCCCCCTTCAGAATATTCCTACTCAGTCAAAACATGGAGGTGATGATGACCTATTTTGGGGCCCCATTGAGTCAAAGCAGGAGAATCAGCGGGTTGATGTACGTCCTGGGAGCCACGGAAACTGGGGAAATAGGAACACCCCTGTAAAAGCAGTAGCTTCAACTGGGTTGTTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACCATCTTTCGTCCTCGCCTGCACAATCGTCTCAGAAAGGCAAGCAAGATCCAATTACCAAACATTCAGAAGCTATGGGCTTCCGTGATTGGTGTGAGAATGAATGTGTAAGGCTCATTGGGACAAAAGACACGAGTTTCCTGGAATTCTGCTTGAAGCAGTCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAATCTTGGATCATATGATCCCGACCATGAGTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTATTGAAATTGCATTCCAAAGTCGGAACGAGAGGAAGGTATCTGCAATGGCTTCCCGAGATGTGAATTCCGGCAATGCTGGTGGGGGGGATCTGGACCCGGACATGTCTGCTGGCCGAGATGGGTCGGCGAAAAGTGGAGGAGGGAAGAAGAAAGGAAAGAAAGGAAAGAAGATCAATCCATCAGTTTTGGGGTTTAATGTAGTTAGTAACCGAATCATGATGGGTGAGATTCAGACGGTTGAAGATTAG 5538 44.69 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGMGTGENNFSHQPVYGNRMDTMKGSENSEDMNEIQKKKEIFRPSLTDSEIGRRDRWHDEERENSSSVRKDRWRDGEKEIGDGRKMDRWNEDSSTRVFRESRRGPSERWSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTQTPIKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPPNSIYSSPHSLGASSEKSGREPYYYKYSRTKLLDVFRTTSLTSQQTLKDGFVPVPTLTLDEPLEPLALCVPTTEEMAFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQTRRTKLGVSPSLGSREDLPHGFDDCNDDKDDSTTKPGHTNYSEVTTERQLPYHRPLAHASSTFKSEAFREDDNAMRKADEGPVSRESSVKGGTNVQHGRTWDASSSLEQLLNTSLPDWRDNPNNINSGTPDKGLQSSKNLNDGWGSNSATPSYPKENPKWHTGDESILRRQLSGILDKEQLARKTVQSAPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRLANAPNDLPFSALGDAMPHLRSKAKPPPGFCGPKQNEFADTLGNASIGSLGKLHTGLNEIDPLRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGLPGYFGNNSNNLPSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDASSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHPQSADMSAILQGLSDKAPPGINDVAGWSKFASQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPPLTNLLAQATDNSTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKILLLKQQQKQEEQQQLLQQQQQLLSQVLSEHQSRQHFVDPSFGQLHGAPIPIGNASNDPSQVQLSREKFQIGSQKPLNVLTDHATTYGNMALQATQGASYNVNSEDPSLILPPHMFGNVVQQQKSWTAAIPEQLNDTRPKDVIPGSNVVEGSLLPGMSSKSNEDVNLVPKSSDSHTIIKTSEKISEDVPRLDATVTSFASVDATVEPLPLKNAEISVAIPPPAVHNIEISVPDSVPAVKGQEASMPMEKLARDGSRDETSLEAEVKNVEVQEPRKSSDKKTKKQKSSKLLSYDQAKDSKNSGIQQSKQSKSGKSENDLKLKSDNIVGKSSDTACSPRKMRDGDSKIAIVDSQLDQSSASAVNSWNDGEIVQVRDESRLIGSDSVLNSQTQSSQRAWKIASNFKPKSLLEIQEEEQKMAHTETVVSDISTSINTMSLSTPWAGIVSSSDPKASREIHKDSVNSESSEKHENLLTSRSRKSQLHDLLAEDDMEKSGAGDVRVSDTVQIASSPQVMAVRAEPMDENFIEAKDTKKSRKKSAKAKGIGTKASSAVPSADVPVGLSPVEKGKISRQTQQEKEAMPAIPSGPSFGDFVLWKGEVANVAPAPAWSSDSGKVAKPTSLRDIQMEQERKISAAQHSQQISTPQKAQPTQVGRSSRTTPPSWSLSASSPSKAASSPLQNIPTQSKHGGDDDLFWGPIESKQENQRVDVRPGSHGNWGNRNTPVKAVASTGLLSRQKSSGGKADHLSSSPAQSSQKGKQDPITKHSEAMGFRDWCENECVRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNYKELLPADVIEIAFQSRNERKVSAMASRDVNSGNAGGGDLDPDMSAGRDGSAKSGGGKKKGKKGKKINPSVLGFNVVSNRIMMGEIQTVED 1845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1012245 1021489 - Carg11809-RA Car05g00194 148580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00194 1845 MobiDBLite consensus disorder prediction 1 264 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1374 1409 - -
Car05g00194 1845 ProSiteProfiles GYF domain profile. 580 631 IPR003169 GO:0005515
Car05g00194 1845 MobiDBLite consensus disorder prediction 1458 1488 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 475 543 - -
Car05g00194 1845 Coils Coil 932 956 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1380 1409 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 10 33 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1532 1694 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 452 472 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 371 553 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1644 1688 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1169 1269 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1223 1241 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 405 424 - -
Car05g00194 1845 Pfam GYF domain 583 619 IPR003169 GO:0005515
Car05g00194 1845 MobiDBLite consensus disorder prediction 1777 1823 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 375 396 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1560 1615 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 227 252 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1621 1637 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 1179 1222 - -
Car05g00194 1845 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00194 - - - cmo:103487961 2990.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00194 Car12g00452 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00217 Car-Chr12:1428223 Car05g00194 Car-Chr5:1012245 6.18E-20 transposed
Car17g01309 Car-Chr17:9847877 Car05g00194 Car-Chr5:1012245 1.66E-17 transposed
Car12g00452 Car-Chr12:2854769 Car05g00194 Car-Chr5:1012245 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00194 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.298489 1.337288