Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00199 ATGTCCTTTTCTTCGCGCTCCGCAAAGCTCGCCCTTCTGGCTCTTCTCTCTGCCTCCACTTTGTATTGCTTCTACAAGTCCCGCCGTCTCAGAAAACTTAAACTCTCCTTAAACCCTACGGGTTGTTCTCGCAGACCCAAACTTTTCTTCATTTCCCAAACTGGTACCTCAAAGGCCCTAGCGCATCGTCTGCTTAACGTTTTGAATGCAAATGAGTTGGCGTTTGATATTGTCGATCCCAAGGATTTTGAGCCTGAAGATCTTTTCAAGGAGACTTTAGTTTTGTTCGTTGCTTCCACCTGGGAAGATGGAGGACCGCCTCCTCATGCTAAATTCCTCGCCAGTTGGCTTTCTGAGAGCGCGGAGGATTTCAGAGTTGGTTCGTTGTTGCTTTCTCAGTGTAAATTTGCTGTATTTGGCGTTGGTAGTCGGGCTTATGGAGAGACATTCAATGCGGTTGCAAGGGATTTTTCCAAGCGGATGAAGGCATTGGGTGCGAAGGAGATATTAGCGGTTGGTGAGGGAGACGTTGATGGAGGTGATATAGATAAGTGTTTTGATGATTGGAGTCGGCAATTGCTGAAGGTTTTGAAGGTTGATGCGGTGGGCACTGGTGCGGATTTATATTCTGGGATTGATGAGGACTTTGATGCTGAAAGTGTTGAGGAGGATGACGAAGATGCCGACTCTGGGGAGGAGGACATCGTTGATCTTGAGGATATTGCTGGGAAGGGTCCTTCGAGAAAGTCTACCAATGTAGTCGAAACTAATGGGAAATTGAATGGGAAAAAAGTTATGGTTACCCCGGTGATTAGAGCGAGCTTAGAAAAGCAGGGGTATAAAATTATTGGCTCACACAGCGGTGTGAAAATATGTAGATGGACAAAGTCTCAGCTTCGAGGACGAGGAGGTTGCTATAAGCATTCGTTTTATGGCATAGAAAGTCATCGGTAA 954 46.23 MSFSSRSAKLALLALLSASTLYCFYKSRRLRKLKLSLNPTGCSRRPKLFFISQTGTSKALAHRLLNVLNANELAFDIVDPKDFEPEDLFKETLVLFVASTWEDGGPPPHAKFLASWLSESAEDFRVGSLLLSQCKFAVFGVGSRAYGETFNAVARDFSKRMKALGAKEILAVGEGDVDGGDIDKCFDDWSRQLLKVLKVDAVGTGADLYSGIDEDFDAESVEEDDEDADSGEEDIVDLEDIAGKGPSRKSTNVVETNGKLNGKKVMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1039744 1045632 - Carg11803-RA Car05g00199 148585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00199 317 Pfam Flavodoxin 48 189 IPR008254 GO:0010181
Car05g00199 317 ProSiteProfiles Flavodoxin-like domain profile. 46 194 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00199 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] - csv:101217239 518.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00199 Car-Chr5:1039744 Car10g00374 Car-Chr10:1863923 1.60E-09 dispersed
Car05g00199 Car-Chr5:1039744 Car05g00629 Car-Chr5:3774571 7.67E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00199 Car_Chr05 FPKM 31.254223 33.753914 22.760389 20.025566 37.615467 34.609634 42.386536 23.292608 26.936844 30.592943