Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00223 ATGATGACTACTAAGCTTCTCTTAGTCTTTGCCTTCTGTCGTTTGATAGCCACTGTCGGACTCAACATGGGTCCGACGGCGGAGCTTCCCCGCCTCGGAATCGACGGCCTACTTTCCGTCGACCCTTCCGACGTCCAAATCGCTTCTGTCGATTTCGGCCTCATGACGCGGAATCCTCCTCTCGCTGTCTTACACCCAGCCTCTGCTGATGACGTGGCCAGATTAATCCGGGCAGCGGCGGCGGCGGCGGAGGAGGAAGGGGAGTATGGTGGGTTTACGGTGTCAGCGAGAGGACATGGACATTCGATAAATGGGCAAACGCAGACGGGGAATGGGGTGGTGATTGAAATGAACGGCGGTGGAAGACGGCACCGACGCGGCGGCGAGAGGAGTTCTCCGCCGCAACCTGTGGTGGCGGAGAAAGAGAAATTTGTGGATGTATGGGGCGGAGAGCTGTGGATTGACGTGCTGAAATCGACTTTGGGGTATGGGTTGGCGCCGAGATCGTGGACGGATTATTTGTATTTATCTGTCGGCGGGACACTCTCCAACGGCGGAATCAGCGGCCAAGCCTTCAACCACGGCCCTCAGATCAGCAATGTCCATGAACTCGACGTCGTGACAGGAAACGGGGAGATAATCAAATGTTCAAACGAAGAAAATCCAGATCTTTTCCACGCAGTTCTTGGTGGATTAGGACAATTTGGGATCATTACACGAGCAAGAATCCTGCTCGAACCCGCGCCGCAAAGGGTCCGGTGGATTCGAGTTCTATACTCAAATTTTGAAGCATTTAGGAAGGATCAAGAATGGCTAATATCGTTACATGCAAAGCCAGAGAATGAGAAATTTGACTACGTGGAAGGCTTCGTGATCGTTGATGAAGCTCTAATCAACAACTGGAGATCATCCTTCTTCTCACCGGCTAATCCGGTTAAAATCTCCTCCTTTAACAACAAGCCAGATGGAGGAGTTTTATACTGCTTGGAGATCACAAAAAACTACCATGAATCCGCATCTCCCACCGTAGATCAGGAAGTTGAGGCGTTATTGAAGGAGCTGGATTACATACCCGAGTCGGTTTTCACAACGGACTTGGCTTACGTGGACTTTCTTGACCGGGTTCATAAGGCCGAGTTGAAGCTCCGGTCAAAAGGCTTATGGGATGTTCCACATCCATGGCTCAACCTCTTCGTCCCCAAGTCAAGAATCGCCGATTTTGACCGAGGAATTTTCAAGGGCATTTTGGGAAATAACACCAGTGGGCCCATCCTCATCTACCCCATGAACAAGCACAAGTGGGACCCCAGGAGCTCCGCGGTGGTCCCGGAGGATGACGTGTTCTACCTAGTGGCCTTGCTCCGGTCGGCGTTGGACAACGGCGAGCCAACGCAGTCGTTGGAGTATTTAAGCGACCAGAATCATCAGATTTTGGCATTCTGCGCTAAGGAGGGGATCAAAGTGAAACAGTACCTGCCTCACTACACGACGGAGCGGGAATGGGCGGAGCATTTCGGCGATAAGTGGCCGGAGTTTCAGCAAAGGAAGATGAAGTTTGATCCACGTCACATTCTCGCCACCGGGCAGAGGATATTTCCGCCCTTTACGACGGTGAACACGGCGGTTTCCCGGTAG 1635 52.29 MMTTKLLLVFAFCRLIATVGLNMGPTAELPRLGIDGLLSVDPSDVQIASVDFGLMTRNPPLAVLHPASADDVARLIRAAAAAAEEEGEYGGFTVSARGHGHSINGQTQTGNGVVIEMNGGGRRHRRGGERSSPPQPVVAEKEKFVDVWGGELWIDVLKSTLGYGLAPRSWTDYLYLSVGGTLSNGGISGQAFNHGPQISNVHELDVVTGNGEIIKCSNEENPDLFHAVLGGLGQFGIITRARILLEPAPQRVRWIRVLYSNFEAFRKDQEWLISLHAKPENEKFDYVEGFVIVDEALINNWRSSFFSPANPVKISSFNNKPDGGVLYCLEITKNYHESASPTVDQEVEALLKELDYIPESVFTTDLAYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIADFDRGIFKGILGNNTSGPILIYPMNKHKWDPRSSAVVPEDDVFYLVALLRSALDNGEPTQSLEYLSDQNHQILAFCAKEGIKVKQYLPHYTTEREWAEHFGDKWPEFQQRKMKFDPRHILATGQRIFPPFTTVNTAVSR 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1162540 1165762 - Carg11778-RA Car05g00223 148609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00223 544 ProSiteProfiles PCMH-type FAD-binding domain profile. 56 248 IPR016166 GO:0071949
Car05g00223 544 Pfam FAD binding domain 60 217 IPR006094 GO:0050660
Car05g00223 544 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 532 IPR015345 GO:0009690|GO:0019139|GO:0050660
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00223 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101212272 935.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00223 Car12g00418 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00223 Car-Chr5:1162540 Car05g01311 Car-Chr5:11999968 0 dispersed
Car12g01274 Car-Chr12:11890193 Car05g00223 Car-Chr5:1162540 3.05E-146 dispersed
Car12g00418 Car-Chr12:2668017 Car05g00223 Car-Chr5:1162540 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00223 Car_Chr05 FPKM 27.719021 27.491438 22.325336 21.412964 33.896885 36.617184 34.06842 13.559101 12.783518 12.396863