Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00227 | ATGGCAGACACAGGCTCCGTCTCCGACAGGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCTGCCATGCTGGCCCTGCAATTCGGCTATGCCGGCTTTCATGTCGTCTCTAGAGCTGCCCTCAATATGGGCATTAGTAAACTCGTCTTCCCTGTCTACCGAAACGTCATCGCTTTACTCCTCCTCCTTCCCTTCGCTTATTTCCTTGAAAAGAAGGATAGGCCTGCACTCACTCTTAACTTTGTCCTTCAGTTCTTCCTGCTCGCTCTCGTTGGAATTACAGCCAATCAAGGGTTTTACTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTCCCTGCCATCACTTTCCTCATGGCTGCGCTTCTTAGGATTGAACAAGTGAGACTGAACCGGAAAGATGGGATAGCAAAGGTGATGGGGACTATATGTTGTGTGGCCGGAGCAACGGTGATCACATTATACAAAGGGCCGACCATCTACAGCCCAGCGACGACTGTGACGGTGGAGGGGACGGCGGAGACGGCAGGGATGCTGATGGGGCCAGGAATGTTCCCGTCACTAGGCGATGCAAAGGGAAAAAGCTGGACCTTAGGGTGCGTGTACTTGATCGGGCACTGCTTGTCGTGGTCCGCGTGGCTAGTCTTGCAAGCACCGGTGCTGAAAAAATACCCAGCTCGCCTCTCCGTCACGTCCTTTACTTGCTTCTTTGGCCTCATCCAATTCTTCATTATCGCCGCCGTGTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCCGAAGCCTTTAGCATCGTTTATGCGGGGGTGGTAGCTTCGGGGATAGCGTTTGCCGTACAAATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTCGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTACTTGGGAGGGATCATAGGAGCTGTGCTGATTATATCAGGACTGTACCTTGTACTGTGGGGCAAGAGCGAAGAAAAGAAGTTCTTATTGGAAAGGGCAGTGATCCAGTCTGTCCCGGACCATGGTACTCGCAGGCCAAGTGGCCACATCAAACCGTCTCTTAACCAGCCACTTCTTCATCCTACGGCTGACAGTGTTTGA | 1182 | 52.79 | MADTGSVSDRRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFLEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTVTVEGTAETAGMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFFIIAAVFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKFLLERAVIQSVPDHGTRRPSGHIKPSLNQPLLHPTADSV | 393 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1189261 | 1192018 | - | Carg11773-RA | Car05g00227 | 148613 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00227 | 393 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 56 | 166 | - | - | |
| Car05g00227 | 393 | Pfam | EamA-like transporter family | 26 | 163 | IPR000620 | GO:0016020|GO:0016021 | |
| Car05g00227 | 393 | Pfam | EamA-like transporter family | 208 | 346 | IPR000620 | GO:0016020|GO:0016021 | |
| Car05g00227 | 393 | MobiDBLite | consensus disorder prediction | 366 | 393 | - | - | |
| Car05g00227 | 393 | PANTHER | WAT1-RELATED PROTEIN | 14 | 368 | IPR030184 | GO:0016021|GO:0022857 | |
| Car05g00227 | 393 | PANTHER | WAT1-RELATED PROTEIN | 14 | 368 | - | - | |
| Car05g00227 | 393 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 252 | 350 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00227 | Car12g00412 | CCT | |
| Car05g00227 | Car12g00412 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00227 | Car-Chr5:1189261 | Car15g01210 | Car-Chr15:9446730 | 5.21E-79 | dispersed | |
| Car09g00674 | Car-Chr9:3967974 | Car05g00227 | Car-Chr5:1189261 | 3.41E-42 | dispersed | |
| Car12g00738 | Car-Chr12:7112968 | Car05g00227 | Car-Chr5:1189261 | 6.44E-68 | dispersed | |
| Car13g00390 | Car-Chr13:6479742 | Car05g00227 | Car-Chr5:1189261 | 4.43E-72 | dispersed | |
| Car15g01209 | Car-Chr15:9407144 | Car05g00227 | Car-Chr5:1189261 | 3.59E-22 | dispersed | |
| Car02g01299 | Car-Chr2:8656400 | Car05g00227 | Car-Chr5:1189261 | 1.60E-38 | transposed | |
| Car09g00112 | Car-Chr9:552050 | Car05g00227 | Car-Chr5:1189261 | 6.80E-49 | transposed | |
| Car11g00270 | Car-Chr11:1484703 | Car05g00227 | Car-Chr5:1189261 | 9.82E-133 | transposed | |
| Car09g00675 | Car-Chr9:3970433 | Car05g00227 | Car-Chr5:1189261 | 1.85E-25 | transposed | |
| Car12g00412 | Car-Chr12:2632584 | Car05g00227 | Car-Chr5:1189261 | 0 | wgd | |
| Car05g00227 | Car-Chr5:1189261 | Car09g00111 | Car-Chr9:551336 | 6.44E-76 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00227 | - | - | csv:101210562 | 711.835 |