Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00232 | ATGGCTGGGTTCTTCTATCTAGGAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAAAACTTGTTTATGTATAGAAATGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAACAATACACCAATCATCACCAGAATCCTTCTCTTACAGACCATTTATCCTTCGGCGTTGGTCCCAGCCGTCGCAGCTTCATGATCAACGACTCCGATGAGCCATCCAGATCAGCCTTCACCGTCATGCGCCCTGCCGCTGCCTTTGCCGCATCTGCTGCCGCTGCCGCTGGTGGAGGCATGAATTGTCAAGACTGTGGCAACCAAGCTAAGAAGGACTGCGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGCGGCTTTCAGTGTCAGACCCATGTCAAAAGCACTTGGGTTCCGGCTGCTAAACGCCGTGAGCGGCAGCAGCAAATTGCTGCTTTACAACAACAACAGCAACAAGAGCAGTTTCGTGGCGGAGAGAATTCTAAACGACAGAGAGAAACTCAGATTACCACCGCTGTCTCCGCCGCCACCGCCTCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAGTCCGTTACACCGCAGCCGGTGAAAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGATCCTCCAACGCTGGACCCACTTCCGCATCTACCTCCGCCGCAACTAGTACCAACCCCTCCGCCGCCCCGTTGCTCGACCCTACGATATATCCAGCTCCTCTCAATGCATTCATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA | 1008 | 52.58 | MAGFFYLGGGREGPPNKQEEEEEREQNLFMYRNEEIYNKGFEIWPQQYTNHHQNPSLTDHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAAFAASAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQEQFRGGENSKRQRETQITTAVSAATASATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEVRYTAAGESSSGHGGDGSTHPLNLIAGSSNAGPTSASTSAATSTNPSAAPLLDPTIYPAPLNAFMAGTQFFPPSRS | 335 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1231740 | 1233058 | - | Carg11768-RA | Car05g00232 | 148618 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00232 | 335 | Pfam | Domain of unknown function (DUF702) | 105 | 259 | - | - | |
| Car05g00232 | 335 | MobiDBLite | consensus disorder prediction | 270 | 306 | - | - | |
| Car05g00232 | 335 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Car05g00232 | 335 | MobiDBLite | consensus disorder prediction | 263 | 306 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00232 | Car12g00407 | CCT | |
| Car01g01515 | Car05g00232 | CCT | |
| Car05g00232 | Car12g00407 | ECH | |
| Car01g01515 | Car05g00232 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00232 | Car-Chr5:1231740 | Car19g00232 | Car-Chr19:2337957 | 2.55E-94 | dispersed | |
| Car01g01515 | Car-Chr1:12816384 | Car05g00232 | Car-Chr5:1231740 | 8.54E-86 | wgd | |
| Car12g00407 | Car-Chr12:2598434 | Car05g00232 | Car-Chr5:1231740 | 3.92E-126 | wgd | |
| Car03g00648 | Car-Chr3:5844979 | Car05g00232 | Car-Chr5:1231740 | 9.45E-42 | wgd | |
| Car05g00232 | Car-Chr5:1231740 | Car07g00399 | Car-Chr7:2030316 | 3.93E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3532 | PF05142 | DUF702 | 1.00E-67 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00232 | - | - | csv:101213154 | 512.686 |