Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00236 ATGACCATAAATCGTCTGCGGATTTCGAGCTCATTTGCGAAGATGGCTGAGGAGATCAGTAAGGCAGAACTCAGAACTGCCACTTCTGCGGCAGAGAAGGCGCAATCGAGATCTCTTTGGCCCTCTGTTCTCCGTTGGATTCCCACCTCCACCGATCATATCATCGCCGCCGAGAAGCGACTTCTCTCTCTTGTCAAAACTCCCTATGTCCAAGAACGGGTTAACATTGGTTCTGGCCCGCCAGGAACGAAAACTAGGTGGTTTTGTTCTTCGAGTGATGAGCCTAGATATATCAACACCGTGACATTCGAAAGCAAAGCTGAGTCTCCGACTCTTGTAATGATTCATGGTTATGCTGCTTCTCAAGGGTTCTTCTTCCGGAATTTTGATGCTCTTGCCAGTCGCTTCCGGGTCATTGCCGTCGATCAACTTGGAGGTTTGGGCCCTTGGGGTCCAGATCTTGTTCGCAAATATACAAGTTCGAGGTTCGGGACATACTCAATTGGGGACATATTGAATGATGAAGAATCCAGATTGTTATCAGATTATGTATATCACACATTAGCAGCTAAGGCTAGTGGAGAATTGTGCTTGAAATACATATTTGCATTTGGTGCGTTTGCTCGGATGCCACTTCTACAGAGGGCATCCGAATGGAAAGTTCCTACAACATTTATATACGGTTACGAAGATTGGATGAACTATCAAGGCGCTCAAGAAGCTCGCAGAAGTATGAACACACCGTGCGAAATACTACGCGTTCCTCAGGCTGGTCACTTTGTGTTCATAGACAGCCCTAGCAGTTTTCACTCAGACGAACTCCACAATTCACCAGAGATCACTGAAGAAGAAGAAGCCTTGTCTTCTCTCCGCCGGAGAATACGCATTCCGATGGAAACAATGTCGAGCTACATAGCCACTGGTCTTTACAGCCGCTTACCTTTCACATTTCCACGCCTTAAACCACGACGTCTCAACTACTCCGGCGGGGGTAGCGTCTCCGTAAACTGCGTTGCTAGCAAATGGGCTGAGCGACTACTTGGAGATTTTCAATTCCTCTCCGGTTCCTCATCCACCGTCACTCTCTCTCCTTCTTTCCCTCCTCATATTGCCTCCCCCGAGCGCCATGTTACAATCCCCATCGATTTCTATCGAGTTCTTGGAGCTGAGACGCATATTATTGGGGATGGGATTTGTAGAGCTTACGAAGCTAGAGTTTCGAAGCCGCCGCAGTATAGGTTTAGCCAGGAGACTCTGATTAGTCGCCGGCAGATTCTTAAGGCAGCTTGCGAAACCTTGGCGGATCATACTTTGCGAAGAGAGTACAATAAAGGCCTTTCGGAAGATGAAGACGGTACCGTTCTCACGCAAGTTCCTTTCGATAAGCGAATGTCAGTTGTTCCAGTACCTGATCAGGCTGTTCCTGGTGCTTTGTGTCTGTTGCAAGAAGCTGGAGAGACAGCATTGGTTCTTGAAATTGGAGAGAGCTTGCTCAGAGAGAGGCTGCCAAAGTCATTCAAGCAAGATATTGTCCTGGCCGTGGCTCTTGCTTATGTTGACATATCAAGGGATGCTATGGCATTATCTCCTCCTGGTTTTATTCAGGGCTGCGAAGTGCTCGAGAGGGCCTTGAAGTTGTTGCAGGAGGAAAGTGCTAGTAGCCTTGCACCTGATTTGCTTTCACAAATTGATGAGACATTAGAAGAGATCACACCTCGATGTGTTCTGGAACTGTTAGCTTTGCCTCTCGATAATGAGTGGCGAAAAAGAAGGGAAGAGGGTCTTCATGGCGTGCGCAATATTTTGTGGGCTGTTGGAGATGGGGGAGCAACAGCTATTGCTGGTGGATTCACCCGTGAAGACTTTATGAATGAGGCATTTGAACGAATGACAGCATCTGAGCAGGTTGATCTCTTTGTAGCTACACCAACAAATATTCCTGCAGAACGTTTTGAAGTGTATGGAGTGGCACTTGCACTCGTGGCACAAGCCTTTGTTGGCAAAAAACCGCACCTTATCCAAGATGCTGACGACCTCTTCCAACAACTTCAGCAAACTAAGGAAGCTGTTGTTGGGACTGCTGTCACAGAATATGCACCTCGCAAGGTTCATTTTGCCCTTGAAAGGGGGCTATGTTCCTTACTTTGTGGAGAACTTGATGAGTGTCGATCATGGCTGGGCCTAGACAGTGAGACTTCACCTTACAGAAATCCAGCTATTGTAGATCATATTCTAAATAATTCTGAAAATGATCTTCCGGGGCTATGTAAGCTGTTGGAGATGTGGTTAGCGGAAGTGGTGTTCTCCAGATTTAGAGACACGAAAGACATTTATTTTAAGCTTGGAGATTACTATGATGATCCCACTGTTTTGAGGTACTTAGAGAAACTGGAAGGAGTTAATGGTTCACCACTAGCTGCAGCAGCAGCTATAGTGAAGATTGGTGCTGAGGCTACTGCAGTTCTTGATCATGTGAAATCCAGTGCTATTCAAGCACTGCAGAAGGTGTTTTCCCTCGGTCAGAACAGTTCTAGGCGTGAGGCAGATGCGGAAACGGAATATATTTTTCCTGTTGTAAATAGTCAGGTGCCTTTAGTGAGCTTTGATGAGAATGAAAATGAACGTACCAACTTATCTGAGGTTTCTGAGAGAGCTAAATCTGGCGAAATAAACGATGAAAAACCAATTACTGATCAAATTAAAGATGCAAGTGGGAAGATCATGTGTGCTGGTTTGGCAGTTGGGTTGGTGACTTTGGCTTGTTTGAGGTTCTTACCTGCTAGAAATAGCACAACTTCTCTACTTAAAGAAGCTGGTTCTTCTAGCGCATCAACTACCAGTGTAGCATCTGAAGTCAAAAAGTCCAGCGAGGAGTCGTCTAGAATGGATGCACGGATTGCAGAAAGTCTAGTTCGCAAATGGCAGAGAATTAAGTCTCTGGCTTTTGGACCTGATCATTGCCTAGAAAAACTACAAGAGATATTAGATGGTGAGATGTTGAAGATTTGGACGGATCGTGCAATCGAAATTTCAGAAATCGGTTGGTTCTATGACTACACACTCTCAAGTCTAACCATTGACAATGTAACAGTATCTTTAGATGGCCAGCGTGCCATGGTGGAAGCAACTCTTGAAGAATCAGCTCATCTCATTGATGTAGGCCATCCAGAACACAATGACTCACACAGAAAAACCTATACAACAAGATATGAGATGTCATATTCCAGTTCTGGATGGAAAATTACCAAAGGTGCCGTTCTTGAATCTTAA 3270 45.54 MTINRLRISSSFAKMAEEISKAELRTATSAAEKAQSRSLWPSVLRWIPTSTDHIIAAEKRLLSLVKTPYVQERVNIGSGPPGTKTRWFCSSSDEPRYINTVTFESKAESPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGGLGPWGPDLVRKYTSSRFGTYSIGDILNDEESRLLSDYVYHTLAAKASGELCLKYIFAFGAFARMPLLQRASEWKVPTTFIYGYEDWMNYQGAQEARRSMNTPCEILRVPQAGHFVFIDSPSSFHSDELHNSPEITEEEEALSSLRRRIRIPMETMSSYIATGLYSRLPFTFPRLKPRRLNYSGGGSVSVNCVASKWAERLLGDFQFLSGSSSTVTLSPSFPPHIASPERHVTIPIDFYRVLGAETHIIGDGICRAYEARVSKPPQYRFSQETLISRRQILKAACETLADHTLRREYNKGLSEDEDGTVLTQVPFDKRMSVVPVPDQAVPGALCLLQEAGETALVLEIGESLLRERLPKSFKQDIVLAVALAYVDISRDAMALSPPGFIQGCEVLERALKLLQEESASSLAPDLLSQIDETLEEITPRCVLELLALPLDNEWRKRREEGLHGVRNILWAVGDGGATAIAGGFTREDFMNEAFERMTASEQVDLFVATPTNIPAERFEVYGVALALVAQAFVGKKPHLIQDADDLFQQLQQTKEAVVGTAVTEYAPRKVHFALERGLCSLLCGELDECRSWLGLDSETSPYRNPAIVDHILNNSENDLPGLCKLLEMWLAEVVFSRFRDTKDIYFKLGDYYDDPTVLRYLEKLEGVNGSPLAAAAAIVKIGAEATAVLDHVKSSAIQALQKVFSLGQNSSRREADAETEYIFPVVNSQVPLVSFDENENERTNLSEVSERAKSGEINDEKPITDQIKDASGKIMCAGLAVGLVTLACLRFLPARNSTTSLLKEAGSSSASTTSVASEVKKSSEESSRMDARIAESLVRKWQRIKSLAFGPDHCLEKLQEILDGEMLKIWTDRAIEISEIGWFYDYTLSSLTIDNVTVSLDGQRAMVEATLEESAHLIDVGHPEHNDSHRKTYTTRYEMSYSSSGWKITKGAVLES 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1314692 1324055 - Carg09423-RA Car05g00236 148622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00236 1089 Pfam ARC6-like, IMS domain 967 1082 IPR025344 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00236 - - - csv:101212436 1273.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00236 Car12g00402 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00236 Car-Chr5:1314692 Car09g01061 Car-Chr9:9390969 1.36E-11 dispersed
Car12g00403 Car-Chr12:2568258 Car05g00236 Car-Chr5:1314692 0 transposed
Car12g00402 Car-Chr12:2563400 Car05g00236 Car-Chr5:1314692 3.24E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007804 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00236 Car_Chr05 FPKM 19.153006 24.210934 8.478069 11.134244 12.615165 12.78769 14.506375 7.855903 6.46155 7.656098