Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car05g00237 | ATGTCGTCAACGTTTAGCGGTGATGAAACGGCACCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGCACGGCGAAGAGCGGGGTTGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCAAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATTATTCTCTCATCCCGAGCTGGTCAGTCAAGAGCTGATTAA | 498 | 51.0 | MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1324748 | 1327180 | - | Carg09422-RA | Car05g00237 | 148623 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car05g00237 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 13 | 77 | IPR035921 | - | |
Car05g00237 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 156 | IPR035921 | - | |
Car05g00237 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Car05g00237 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Car05g00237 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Car05g00237 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 134 | 157 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Car05g00237 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 165 | - | - | |
Car05g00237 | 165 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 13 | 121 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
Car05g00237 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 165 | - | - | |
Car05g00237 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 156 | - | - | |
Car05g00237 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
Car05g00237 | 165 | Gene3D | - | 11 | 162 | IPR035921 | - | |
Car05g00237 | 165 | Pfam | ATP synthase subunit C | 97 | 155 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Car05g00237 | 165 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car05g00237 | Car12g00401 | CCT | |
Car05g00237 | Car12g00401 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car05g00237 | Car-Chr5:1324748 | Car09g00709 | Car-Chr9:4216885 | 9.27E-113 | dispersed | |
Car05g00237 | Car-Chr5:1324748 | Car05g00238 | Car-Chr5:1328960 | 3.50E-112 | tandem | |
Car12g00400 | Car-Chr12:2556533 | Car05g00237 | Car-Chr5:1324748 | 2.71E-113 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car05g00237 | K02155 | - | pvy:116145974 | 288.885 |