Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00237 ATGTCGTCAACGTTTAGCGGTGATGAAACGGCACCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGCACGGCGAAGAGCGGGGTTGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCAAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATTATTCTCTCATCCCGAGCTGGTCAGTCAAGAGCTGATTAA 498 51.0 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1324748 1327180 - Carg09422-RA Car05g00237 148623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00237 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Car05g00237 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Car05g00237 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00237 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00237 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00237 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00237 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Car05g00237 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Car05g00237 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Car05g00237 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Car05g00237 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Car05g00237 165 Gene3D - 11 162 IPR035921 -
Car05g00237 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Car05g00237 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00237 Car12g00401 CCT
Car05g00237 Car12g00401 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00237 Car-Chr5:1324748 Car09g00709 Car-Chr9:4216885 9.27E-113 dispersed
Car05g00237 Car-Chr5:1324748 Car05g00238 Car-Chr5:1328960 3.50E-112 tandem
Car12g00400 Car-Chr12:2556533 Car05g00237 Car-Chr5:1324748 2.71E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00237 K02155 - pvy:116145974 288.885