Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00238 | ATGGGCAGTGCTTCTGTTAATAACTTTGATAAACGAAAATGTTCCTTATGTCTAGACAAAGGAGATCGACTGCTTATGCGACTTGGAACACGACAAATGCAATATACGCACCGAGGCATCTGTAAGTTTGCAGTGTATGGATTGTTGCTTCACTCATACCCACAATTAGACAATTGTTGCGAGGCGACAAAGTTGTGGGCTTATTTGAAGAACAGGAAGAAGGGGGGAGAGAGAGAGAGAGAGTTCGAGATCGGATCTAATCGGCGACCTTCTTCATCTTCACCATCGAACCCAGAAAAGATGTCGTCAACTTTCAGTGGCGATGAAACGGCACCTTTCTTCGGCTTCCTCGGCGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCTATTGTTCCGGTGGTCATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTGATTATTAGCACAGGGATTAACCCCAAAGCCAAATCTTATTACCTTTTCGATGGCTACGCGCATCTCTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCCCAGCAGCCCAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTTGCTGAAGCGCTGGCACTGTATGGACTCATCGTGGGCATTATTCTGTCTTCCCGAGCTGGTCAGTCGAGAGCTGATTAA | 798 | 48.75 | MGSASVNNFDKRKCSLCLDKGDRLLMRLGTRQMQYTHRGICKFAVYGLLLHSYPQLDNCCEATKLWAYLKNRKKGGEREREFEIGSNRRPSSSSPSNPEKMSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1328960 | 1331705 | - | Carg09421-RA | Car05g00238 | 148624 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00238 | 265 | MobiDBLite | consensus disorder prediction | 87 | 105 | - | - | |
| Car05g00238 | 265 | MobiDBLite | consensus disorder prediction | 79 | 105 | - | - | |
| Car05g00238 | 265 | Pfam | ATP synthase subunit C | 117 | 176 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
| Car05g00238 | 265 | Pfam | ATP synthase subunit C | 197 | 255 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01167 | Car-Chr4:6708950 | Car05g00238 | Car-Chr5:1328960 | 1.06E-111 | dispersed | |
| Car04g01259 | Car-Chr4:7305690 | Car05g00238 | Car-Chr5:1328960 | 3.21E-21 | dispersed | |
| Car05g00238 | Car-Chr5:1328960 | Car12g00400 | Car-Chr12:2556533 | 5.61E-112 | dispersed | |
| Car05g00237 | Car-Chr5:1324748 | Car05g00238 | Car-Chr5:1328960 | 3.50E-112 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00238 | K02155 | - | dcr:108214040 | 289.271 |