Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00239 ATGCTGTTACAAACCCTAGATGCGTGTTTTCTTACATCTCTTATCGCATTGTTCTTTTGTTATTTTGGTATTGGTCGAGTTAGGAAGGAACTCTTTCCGATATTCGCGGGTTACACCATCGAGATTTGCTGGTTATTTATTGAATGTGGGCTTGAGAAGATGGACGGAGACAACAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGAGGGTGGGTTTGATTCAGACGATGATGAACCCATTGGATCTCTTCTGAAGTTGAAGAGATCACGCAACTCTAAGAAGAGTAAGTTGGGTGTAGACGATGGTGGTGAAAGGGACAAGATAGTTGACAAGAAAGGAGCAAAACATCCAGAGCAAGAGGATATTGGGGGAATGGACGACACTTTAGCCAGTTTCAGAAAAAAGTTGAGGGGTCCTAAAGAGGTTGGACCCAGAATTGCTAGGAAACAGAGTTCTTCTGTAAGTGTGGCAGAATCTTTGGGTAATGCATCCAGAGGACAAGGGGATTTAGACGCAAGATTTAGACCAGAAAAGGGTGAATTAATGGACCGTGAAGAGTTTGATTCATCTGCAATGATTGATGTAGAAACGAGGTGTGAAGCACCTGTTTTGGAATTAAAAGACATGGAGACGGGTATCTCGAGTCGGAGAAGTGCTAAGTTGGATGATTCACTGTCAGCATTTGTCCAAAAGGTTCAATCTGGTTCAACTAGGAAAACATTCATATCTACAACATTTAAACCGGATTGCAAGGACGAGACTTCAGAAGATAAATTGAGTCCTTTTTCTAGAACTGGGGATCATGAAACATACTCCATAGTGAGTTCTGATTCTTCTGCTAAGCTGGCACAAGTTGTAGAAAAAACAGATTCTGATCTTACTATGTCATGTTTAATTTCCTGTTCACGGTGCACTGGAGAGAATTGTAATCCTAATCCCGATCAAGGACAATGCCACCAAGGGGTCGAAGGTGACCAAGAAGAGTATCAACGTCGTCTCAATAATCAAGATAGCAAAAACTATAGTCAATTTAGGGACAATTTCCAGGGGCTGGAAAGAAAGGCATCATGTGAAATCAAGAATGCATTAAAACATTGTTCTTGTGGCGAAACAATGGAGCGTAGCCATTTGGCAGAAAGGATTTCTCTTCAGGATGGGCGAGGTGAAAATCATCTTAATGAAAATATGTACAGATCTTTTCACCCTCTAGAACAGTCAAAAGAAAACCATGGCCTTTGTGGGGGTGTTTCCAGCGGATATTTTTGTGATGTGGTGGCCCAAGAGACCACAGTTACTTTGTCTAAAAAAACTTTAGGTGTAGATTGTGAAGGAAAAAATAGATTACTTGTTATGCATCATGATGAATTGCCTACCTCTACCAACTTCTGTGAAAGTTCTTCCAAAGAATTCTGTAGATCTACTCAAAATTTAAAGATTTCTGATCAATCATTAGACAGAACAACACTCTCCAATCTTCAGATATCCGCAGCTTTCGATTCAACGGAAGTGGATAAGACTTGCTGTGACTCCGAAAATTTAAATACTGGAACTGATGTGCCAAATTCCAAAGGTGGTTCTAGGCAGAAGGAAAATGCTCTGATCTCTCGGAGGATTTCAGATTCAATTGCTGTTCAATGTTCCAGATCCCAAAAATCTGTGGCAGCTACATCCGTACCAAATTATCCAGAAGTTTGTCCTATTGGAAATTTCAGCATGATATCAGACAATCAACTGGTCAAGGCTTCCGTAGTGATAGATGGTCCAAATAATATACTTCCTGGTAAGGACGTTAAGGTATCTTCTCCTGGGTCTTTGACTCCAGAAGATAATGACCTTGAGGATGTAGTATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAACGTGTAGCGCGCAAGACAAAGAAGCCCAGACATGATGACATGGCTTACGAAGGAGATATTGATTGGGAGATTTTGATTAGTGAGCGTGTAGTTGATGGTGACCATTCTTTTAGATCAAGAAGGGATTCTACATCAACAACTTTTACTGAAGCGGAAACTGGTGGTAGAGCTGCAGTATCTGCAGGGCTGAAGGCTCATGCAGTTAATCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACTTGGCATGCAGGAATCAGATCCTGGGCCTTTGGAGTAAAGATGTTACACGCATTTTGAATCTTGTTGACTGTGGGGTCACTAATACTCCCTCTATGGATGAACCACCACGTTTCCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTCTGAGAAAGTCAAATCAGAATCTGATATTAAGTATGAATATGAGCTGGGAGAAAAGAAAGTTGGAGAGGTTACTGTTGCTTCAGCTGCTGATTCTGAGGAAGGGGTTTGTGTCATTGTTAAAAATTCTGATGCTTCGGATGCAGAGAACAATGTTGTAGCTGGCTGTGAACTACTATTGGAAGACACTGAAGGAAGAGATCTTGTGATTGAAAATAATTTTGAGTTAGCAAAACCAGTGGAACATGAACAAGAATTGGTACAGGACTTGGAGTACGGTACTCTTGATCCTATACCGGTAAAATCTGTAGGTATTGATGTTCCAGGTAAAGCTGCCTCACATTTAACTAACCAGTCAAGAAATGGTCGGCACCAAATCCAGTCCTCCGATGCGTGTGTCGGAGGTGATCAACAACAGCAGAGTAATTCTGAAGTCAGAAAGAAAGTAATTGTTATTGGAGCCGGTCCTGCTGGCTTAACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCATTGTACTTGAAGCTAGGAATAGGTTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCAACTGAAAGAAGACCCGATCCGTCTTCTTTGATTTGCACTCAATTGGGTCTTCAGTTGACTGTATTAAATAGTGACTGTCCACTCTATGATATCATTACATGCAAAAAAGTTCCAGTAGACATGGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGAGAGCACGCAATGGCCATGTCTCTTGAGGAGGGTTTAGAATATGCCCTTAAGCGACGGCGCATGGCTCGATTGGGAATAGATGCTTGTTCTGAGAAAGAGCTTTTGAGTCCCTTTGAGAGGCGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCGAGAAAGTATCTCTTCCTAATTGGAATCAGGACGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTAGTTGAGTCTCTTGGTGGAGGACTCAATGTTCACCTAAATCATGCTGTGGCTGATATTTCTTACAGCACCAATGACATTGAGTTAACCGAGAATCAGTGTGCAAAGGTAAAAGTTTCCACAACCAATGGCTCTGTGTTCCTAGGAGATGCTGTCCTTATTACCGTGCCTCTTGGGTGCTTGAAAGAAGAAACTATTAAGTTTTCCCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGATTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCTGTTCTCATGGCATTAGTGGTTGGTCAGGCGGCTGTGGAGAGGCAATATATGAGCTCTTCTGATAACGTAAGCCATGCATTAATGGTCCTTAGAAAACTTTTTGGAGCAGCTATGGTGCCTGATCCAGTTGCAACTGTAGTGACTGATTGGGGACGAGATCCGTTTAGCTATGGTGCTTACTCTTACGTTGCTGTTGGAGCATCGGGAGAGGATTATGACATTTTAGCGAGGCCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACCGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATATATTGAGTTATGGTTATGATTTTACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGATTGTGAGAATGATGAAGTTGGAGACATAATTACAAGACTTGATGCTGTTAAGCTTTCTGATGCTCTTTTCAAAAATTCTTTGGATGGATCTAGGATTGTGACCAGAGAAGCTTTACTAAAAGACTTGTTTTTTAGTGCAAAAACAACAGCAGGGAGATTGCATGTGGCAAAAGAGTTGCTGAATATCCCTGTTGAGACGTTAAAGTCTTTTGCAGGGGCTAAAGAAGGCCTTACAGTTCTCAACTCGTGGATATTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTGCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGTGCCATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGGTTAAAACTCCCAAAGTCAGTTTCTACTGTAGAATCATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGAAAACCTCCTTTGCACTCAAACAACTGCGCGCTGGATAGTAGAGGCAATTTGCCAACTTCTGCATCAGCTGCAATTCCCTCAACGTCTGATGTCAATATGAAAAGTGATAATAGTAAATTGAAATTGGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTTGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGTGATGACAGAAGAAGAGGAGACTGCCTTTGCTGCTGCTGAGGCGGCACGTGCTGCAGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCCTCCTTTCACAAATTTGCCAGAAGGGAGCATTATGCTCAAATGGATGAGTACGAGTATAAAAGGAAGTTGTCTGGCAGTGTGCTAGGAAGACAAGATTGTACTTCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCGCAAAGAAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAACACTCTGGCGAAAGTGTTCCTATGGATAGTAGTATATACACGAAAGCATGGGTCGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCAATTGAGAGATGGCGGACTCAAGCAGCTGCAGCTCATGTAGATGATGAGGAGGATTCAAACACAAATTGGAACAACCCCACTTGGAATAGTGATCAATTAGCGAATGAGAGCTCAATATCACAAGTGACGATCAGCAAGGAGCCGATAAGAAACCATCAACATGGGGCTGACAGAATTAAGCAGGCTGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATATAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAAGCCACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGGTTTGCTTCCATCTATAA 5859 42.02 MLLQTLDACFLTSLIALFFCYFGIGRVRKELFPIFAGYTIEICWLFIECGLEKMDGDNKKSGFRKRTKPKEGGFDSDDDEPIGSLLKLKRSRNSKKSKLGVDDGGERDKIVDKKGAKHPEQEDIGGMDDTLASFRKKLRGPKEVGPRIARKQSSSVSVAESLGNASRGQGDLDARFRPEKGELMDREEFDSSAMIDVETRCEAPVLELKDMETGISSRRSAKLDDSLSAFVQKVQSGSTRKTFISTTFKPDCKDETSEDKLSPFSRTGDHETYSIVSSDSSAKLAQVVEKTDSDLTMSCLISCSRCTGENCNPNPDQGQCHQGVEGDQEEYQRRLNNQDSKNYSQFRDNFQGLERKASCEIKNALKHCSCGETMERSHLAERISLQDGRGENHLNENMYRSFHPLEQSKENHGLCGGVSSGYFCDVVAQETTVTLSKKTLGVDCEGKNRLLVMHHDELPTSTNFCESSSKEFCRSTQNLKISDQSLDRTTLSNLQISAAFDSTEVDKTCCDSENLNTGTDVPNSKGGSRQKENALISRRISDSIAVQCSRSQKSVAATSVPNYPEVCPIGNFSMISDNQLVKASVVIDGPNNILPGKDVKVSSPGSLTPEDNDLEDVVSAPGSEKDLKLSALQRVARKTKKPRHDDMAYEGDIDWEILISERVVDGDHSFRSRRDSTSTTFTEAETGGRAAVSAGLKAHAVNLLEKIKFKDVLKRKGGLQEYLACRNQILGLWSKDVTRILNLVDCGVTNTPSMDEPPRFPLIREIYAFLNLRGYINAGIASEKVKSESDIKYEYELGEKKVGEVTVASAADSEEGVCVIVKNSDASDAENNVVAGCELLLEDTEGRDLVIENNFELAKPVEHEQELVQDLEYGTLDPIPVKSVGIDVPGKAASHLTNQSRNGRHQIQSSDACVGGDQQQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVIVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLQLTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARLGIDACSEKELLSPFERRVMNWHFANLEYGCAAMLEKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNVHLNHAVADISYSTNDIELTENQCAKVKVSTTNGSVFLGDAVLITVPLGCLKEETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLMALVVGQAAVERQYMSSSDNVSHALMVLRKLFGAAMVPDPVATVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSYGYDFTAEVEAMEAAQRQSDCENDEVGDIITRLDAVKLSDALFKNSLDGSRIVTREALLKDLFFSAKTTAGRLHVAKELLNIPVETLKSFAGAKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLPKSVSTVESLKRKSNKDSSSGKPPLHSNNCALDSRGNLPTSASAAIPSTSDVNMKSDNSKLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIVMTEEEETAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDEYEYKRKLSGSVLGRQDCTSEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESVPMDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVDDEEDSNTNWNNPTWNSDQLANESSISQVTISKEPIRNHQHGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKVCFHL 1952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1332799 1340877 - Carg09420-RA Car05g00239 148625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00239 1952 Pfam SWIRM domain 697 777 IPR007526 GO:0005515
Car05g00239 1952 MobiDBLite consensus disorder prediction 894 921 - -
Car05g00239 1952 MobiDBLite consensus disorder prediction 1580 1663 - -
Car05g00239 1952 MobiDBLite consensus disorder prediction 95 146 - -
Car05g00239 1952 MobiDBLite consensus disorder prediction 1595 1631 - -
Car05g00239 1952 MobiDBLite consensus disorder prediction 1643 1657 - -
Car05g00239 1952 MobiDBLite consensus disorder prediction 58 86 - -
Car05g00239 1952 ProSiteProfiles SWIRM domain profile. 687 787 IPR007526 GO:0005515
Car05g00239 1952 MobiDBLite consensus disorder prediction 150 164 - -
Car05g00239 1952 Pfam Flavin containing amine oxidoreductase 938 1390 IPR002937 GO:0016491
Car05g00239 1952 MobiDBLite consensus disorder prediction 1837 1859 - -
Car05g00239 1952 MobiDBLite consensus disorder prediction 58 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00239 - - - bhj:120075972 3134.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00239 Car12g00399 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00239 Car-Chr5:1332799 Car15g00466 Car-Chr15:2486101 5.59E-92 dispersed
Car12g01262 Car-Chr12:11850359 Car05g00239 Car-Chr5:1332799 1.46E-13 dispersed
Car20g00639 Car-Chr20:3601007 Car05g00239 Car-Chr5:1332799 1.25E-06 dispersed
Car05g01310 Car-Chr5:11990647 Car05g00239 Car-Chr5:1332799 2.02E-32 transposed
Car12g00399 Car-Chr12:2546595 Car05g00239 Car-Chr5:1332799 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3533 PF01593 Amino_oxidase 6.90E-101 CL0063 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00239 Car_Chr05 FPKM 0.828383 0.0 0.0 0.575843 0.0 0.74237 0.0 0.0 0.399449 0.0