Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00249 ATGTCGAACGCCGTCGAAGATCTCATCCTTCGCCACCGCCATCGCCACTCCGATTTCCGATTTCATCTCCTTCAATCTCGCTCTCACCATCGCGATATGTCTTCGTCGTCTGCTTCTTCTTCTTCTTCTTCAGCTCCAGCTCTTCCGCCTCTTTGTTTACTTCAGTGTCATCGGCCTTTTCCGCCGTCGGATCAGTCCAACGCTTGCAACTGCCGTCATGCTCCCGGCGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAACATATGGTATCAATGACTCTGAGGCCTTGGCTTGTGGACGAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTTATGTAAACCAGTATCCAGTGCAAATAAAAAGCAAAACAAAAAGTTGAAGTTGCAGAAAAATTCAAAGTCGAGGACTCAAAAATCCGTAGACGAGCCTATTGATGATCCTAATCTTTCTACCAACGGTCGGTACGACAGTTCATTAGGATTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGACTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTCGAGGGAATAGGGCTTATAGAGAAAACGACGACAAATCATATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAAACTAAAGGCTGAAGTTAAAAGTTTGTATGCAGATGAACATAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAATCTTTTTATAACGGAAGAAGATATCTTGCGAGTTCCTAGTTTCAAGAATCAAACACTCATAGCAGTACAAGCCCCTCAAGCTAGCTGTATTGAAGTGCCTGATCCGGATGAGGAAGCTTGTTTTTCTGAAAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGGGCTGGAAGAAAATAGTTCCAAGCAAGCGAAACTATCTTCTTCGGTACAGCAGAGGAATCCCAACATACATACCAACAATATTTGTTCTCCTTTCCACGAATTTCATGGAATGCAGAGAATCTTACCTTTATATAATAATATAGACGATGATTATTGGTTCCAATCAAATTCTCAAGTGAGCATTACGCACTTATGGGGTGAGGAACACAACTTTTAA 1251 42.05 MSNAVEDLILRHRHRHSDFRFHLLQSRSHHRDMSSSSASSSSSSAPALPPLCLLQCHRPFPPSDQSNACNCRHAPGAHSTVATLDLKRTYGINDSEALACGRVVASEQRMRSNDSLCKPVSSANKKQNKKLKLQKNSKSRTQKSVDEPIDDPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKLKAEVKSLYADEHRLDELIRMKQELLRNLEENANHRKNLFITEEDILRVPSFKNQTLIAVQAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGLEENSSKQAKLSSSVQQRNPNIHTNNICSPFHEFHGMQRILPLYNNIDDDYWFQSNSQVSITHLWGEEHNF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1391206 1395188 - Carg09410-RA Car05g00249 148635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00249 416 Pfam E2F/DP family winged-helix DNA-binding domain 161 224 IPR003316 GO:0005667|GO:0006355
Car05g00249 416 Coils Coil 251 274 - -
Car05g00249 416 MobiDBLite consensus disorder prediction 111 156 - -
Car05g00249 416 Pfam E2F transcription factor CC-MB domain 240 339 IPR032198 GO:0046983
Car05g00249 416 SMART E2F_TDP_2 159 224 IPR003316 GO:0005667|GO:0006355
Car05g00249 416 Gene3D - 154 226 IPR036388 -
Car05g00249 416 MobiDBLite consensus disorder prediction 111 127 - -
Car05g00249 416 Gene3D - 231 341 - -
Car05g00249 416 SUPERFAMILY Winged helix DNA-binding domain 159 222 IPR036390 -
Car05g00249 416 PANTHER TRANSCRIPTION FACTOR E2F 28 413 IPR015633 GO:0000978|GO:0006357
Car05g00249 416 SUPERFAMILY E2F-DP heterodimerization region 236 339 IPR037241 -
Car05g00249 416 PANTHER TRANSCRIPTION FACTOR E2FC 28 413 - -
Car05g00249 416 CDD E2F_DD 235 339 IPR032198 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00249 Car12g00390 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01097 Car-Chr2:7609956 Car05g00249 Car-Chr5:1391206 8.23E-75 dispersed
Car03g01015 Car-Chr3:8427955 Car05g00249 Car-Chr5:1391206 2.46E-73 dispersed
Car05g00249 Car-Chr5:1391206 Car07g00815 Car-Chr7:4316011 2.94E-67 dispersed
Car12g00390 Car-Chr12:2480051 Car05g00249 Car-Chr5:1391206 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3536 PF16421 E2F_CC-MB 2.90E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00249 K06620 - csv:101211469 652.899