Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00249 ATGTCGAACGCCGTCGAAGATCTCATCCTTCGCCACCGCCATCGCCACTCCGATTTCCGATTTCATCTCCTTCAATCTCGCTCTCACCATCGCGATATGTCTTCGTCGTCTGCTTCTTCTTCTTCTTCTTCAGCTCCAGCTCTTCCGCCTCTTTGTTTACTTCAGTGTCATCGGCCTTTTCCGCCGTCGGATCAGTCCAACGCTTGCAACTGCCGTCATGCTCCCGGCGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAACATATGGTATCAATGACTCTGAGGCCTTGGCTTGTGGACGAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTTATGTAAACCAGTATCCAGTGCAAATAAAAAGCAAAACAAAAAGTTGAAGTTGCAGAAAAATTCAAAGTCGAGGACTCAAAAATCCGTAGACGAGCCTATTGATGATCCTAATCTTTCTACCAACGGTCGGTACGACAGTTCATTAGGATTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGACTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTCGAGGGAATAGGGCTTATAGAGAAAACGACGACAAATCATATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAAACTAAAGGCTGAAGTTAAAAGTTTGTATGCAGATGAACATAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAATCTTTTTATAACGGAAGAAGATATCTTGCGAGTTCCTAGTTTCAAGAATCAAACACTCATAGCAGTACAAGCCCCTCAAGCTAGCTGTATTGAAGTGCCTGATCCGGATGAGGAAGCTTGTTTTTCTGAAAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGGGCTGGAAGAAAATAGTTCCAAGCAAGCGAAACTATCTTCTTCGGTACAGCAGAGGAATCCCAACATACATACCAACAATATTTGTTCTCCTTTCCACGAATTTCATGGAATGCAGAGAATCTTACCTTTATATAATAATATAGACGATGATTATTGGTTCCAATCAAATTCTCAAGTGAGCATTACGCACTTATGGGGTGAGGAACACAACTTTTAA 1251 42.05 MSNAVEDLILRHRHRHSDFRFHLLQSRSHHRDMSSSSASSSSSSAPALPPLCLLQCHRPFPPSDQSNACNCRHAPGAHSTVATLDLKRTYGINDSEALACGRVVASEQRMRSNDSLCKPVSSANKKQNKKLKLQKNSKSRTQKSVDEPIDDPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKLKAEVKSLYADEHRLDELIRMKQELLRNLEENANHRKNLFITEEDILRVPSFKNQTLIAVQAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGLEENSSKQAKLSSSVQQRNPNIHTNNICSPFHEFHGMQRILPLYNNIDDDYWFQSNSQVSITHLWGEEHNF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1391206 1395188 - Carg09410-RA Car05g00249 148635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00249 416 Pfam E2F/DP family winged-helix DNA-binding domain 161 224 IPR003316 GO:0005667|GO:0006355
Car05g00249 416 Coils Coil 251 274 - -
Car05g00249 416 MobiDBLite consensus disorder prediction 111 156 - -
Car05g00249 416 Pfam E2F transcription factor CC-MB domain 240 339 IPR032198 GO:0046983
Car05g00249 416 SMART E2F_TDP_2 159 224 IPR003316 GO:0005667|GO:0006355
Car05g00249 416 Gene3D - 154 226 IPR036388 -
Car05g00249 416 MobiDBLite consensus disorder prediction 111 127 - -
Car05g00249 416 Gene3D - 231 341 - -
Car05g00249 416 SUPERFAMILY Winged helix DNA-binding domain 159 222 IPR036390 -
Car05g00249 416 PANTHER TRANSCRIPTION FACTOR E2F 28 413 IPR015633 GO:0000978|GO:0006357
Car05g00249 416 SUPERFAMILY E2F-DP heterodimerization region 236 339 IPR037241 -
Car05g00249 416 PANTHER TRANSCRIPTION FACTOR E2FC 28 413 - -
Car05g00249 416 CDD E2F_DD 235 339 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00249 K06620 E2F3; transcription factor E2F3 - csv:101211469 652.899
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00249 Car12g00390 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01097 Car-Chr2:7609956 Car05g00249 Car-Chr5:1391206 8.23E-75 dispersed
Car03g01015 Car-Chr3:8427955 Car05g00249 Car-Chr5:1391206 2.46E-73 dispersed
Car05g00249 Car-Chr5:1391206 Car07g00815 Car-Chr7:4316011 2.94E-67 dispersed
Car12g00390 Car-Chr12:2480051 Car05g00249 Car-Chr5:1391206 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00747 . 3 360 E2F-DP Transcription Factor Family AT3G48160 54.6 1.2e-95 347.4
Car18g00138 CCT,CST 3 352 E2F-DP Transcription Factor Family AT3G48160 54.9 2.7e-92 336.3
Car02g01097 CST 55 475 E2F-DP Transcription Factor Family AT2G36010 55.5 8.3e-120 427.9
Car03g01015 CST 11 459 E2F-DP Transcription Factor Family AT2G36010 52.1 1.7e-109 393.7
Car07g00815 CST 367 749 E2F-DP Transcription Factor Family AT2G36010 54.8 1.8e-98 357.1
Car02g01097 CST 58 482 E2F-DP Transcription Factor Family AT5G22220 56.5 3.3e-113 406.0
Car03g01015 CST 50 446 E2F-DP Transcription Factor Family AT5G22220 50.4 8.6e-90 328.2
Car07g00815 CST 397 757 E2F-DP Transcription Factor Family AT5G22220 53.8 3.7e-85 312.8
Car20g00133 CST 10 292 E2F-DP Transcription Factor Family AT5G22220 53.8 1.6e-59 227.6
Car05g00249 CCT 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Car02g01097 CST 173 449 E2F-DP Transcription Factor Family AT1G47870 50.9 5.8e-63 238.8
Car02g01097 CST 58 482 E2F-DP Transcription Factor Family AT5G22220 56.5 3.3e-113 406.0
Car03g01015 CST 50 446 E2F-DP Transcription Factor Family AT5G22220 50.4 8.6e-90 328.2
Car07g00815 CST 397 757 E2F-DP Transcription Factor Family AT5G22220 53.8 3.7e-85 312.8
Car20g00133 CST 10 292 E2F-DP Transcription Factor Family AT5G22220 53.8 1.6e-59 227.6
Car02g01097 CST 55 475 E2F-DP Transcription Factor Family AT2G36010 55.5 8.3e-120 427.9
Car03g01015 CST 11 459 E2F-DP Transcription Factor Family AT2G36010 52.1 1.7e-109 393.7
Car07g00815 CST 367 749 E2F-DP Transcription Factor Family AT2G36010 54.8 1.8e-98 357.1
Car05g00249 CCT 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Car02g01097 CST 173 449 E2F-DP Transcription Factor Family AT1G47870 50.9 5.8e-63 238.8
Car13g00747 . 3 360 E2F-DP Transcription Factor Family AT3G48160 54.6 1.2e-95 347.4
Car18g00138 CCT,CST 3 352 E2F-DP Transcription Factor Family AT3G48160 54.9 2.7e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3536 PF16421 E2F_CC-MB 2.90E-25 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00249 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.95625 0.391278 0.0 0.0