Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00259 | ATGGCGGTCTCTGTTCATCATTTCTTATTGGCTTTCTTAAATCTGCTGCTGTTGGTACCAGGTGGGTTTTCGAGGAGCTTTACTTTTGTGAACAAATGTGAGTTCACGGTCTGGCCGGGGATTCTATCGAACGGCGGCGTTCCGCCGCTTCCCACCACTGGATTCTCTCTCCAGACTGGGGAATCCAAGACGCTGCCGGCTCCGGCGTCTTGGGGAGGGCGTTTCTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGGCACCGGCGACTGTGGTTCTAACAAACTCGAGTGCGCCGGAAATGGAGCGACGCCGCCGGCGACTCTGGCGGAGTTTACTCTCGACGGCTCCGGCGGACTTGATTTCTTCGACGTTAGTCTCGTGGATGGTTATAATCTTCCGATGATAGTGGTACCACAGGGCGGCTCCGGCGATAACTGTACAAGCACAGGCTGCGTGGTGGATCTAAATGGCGCGTGCCCATCAGAGCTTCGTGTGACGAGTGCCGACGGAAGGGAGGGTGTCGCGTGTAAAAGCGCGTGTGATGCGTTCAACAAACCGCAGTACTGTTGCACGGGCGCGTACCAAACACCAGACACTTGCCAGCCGTCGATGTACTCTCAGATCTTCAAGAGTGCGTGCCCACGCGCTTACAGCTACGCGTACGACGACAAGACGAGCACCTTCACATGCGCCAGTGCTGATTACGTCATCACATTCTGTCCATCCCCAAACACAAGCCAAAAGTCATCGGAGGCGCAGAACTCACCGGCAACGGCGAACCCATCCTCCGGCGGTGATGGTGCGATGGTTTACGAAGGCGCATCCCTGATACAAATCAACGTAGCGCCGCCGCACGTAGCCGGGATTTCAGCGGTCGGTGCGGTGGCGATTTGGTGGTTGTTGCAGCAGCTGTTCCTCTACTTCTGA | 945 | 56.61 | MAVSVHHFLLAFLNLLLLVPGGFSRSFTFVNKCEFTVWPGILSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCGTGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNKPQYCCTGAYQTPDTCQPSMYSQIFKSACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSGGDGAMVYEGASLIQINVAPPHVAGISAVGAVAIWWLLQQLFLYF | 314 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1442406 | 1444779 | + | Carg09400-RA | Car05g00259 | 148645 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00259 | 314 | MobiDBLite | consensus disorder prediction | 251 | 268 | - | - | |
| Car05g00259 | 314 | Pfam | Thaumatin family | 31 | 247 | IPR001938 | - | |
| Car05g00259 | 314 | ProSiteProfiles | Thaumatin family profile. | 24 | 247 | IPR001938 | - | |
| Car05g00259 | 314 | MobiDBLite | consensus disorder prediction | 251 | 270 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00259 | Car-Chr5:1442406 | Car16g01168 | Car-Chr16:9936919 | 3.88E-97 | dispersed | |
| Car05g00259 | Car-Chr5:1442406 | Car05g00260 | Car-Chr5:1448604 | 3.21E-94 | tandem | |
| Car01g01550 | Car-Chr1:12961740 | Car05g00259 | Car-Chr5:1442406 | 6.80E-103 | wgd | |
| Car12g00381 | Car-Chr12:2434079 | Car05g00259 | Car-Chr5:1442406 | 6.59E-88 | wgd | |
| Car20g00665 | Car-Chr20:3747654 | Car05g00259 | Car-Chr5:1442406 | 1.66E-69 | wgd | |
| Car03g00627 | Car-Chr3:5720392 | Car05g00259 | Car-Chr5:1442406 | 1.32E-105 | wgd | |
| Car05g00259 | Car-Chr5:1442406 | Car07g00370 | Car-Chr7:1850908 | 2.25E-65 | wgd | |
| Car05g00259 | Car-Chr5:1442406 | Car09g00086 | Car-Chr9:437417 | 1.47E-104 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00259 | - | - | csv:101204094 | 589.726 |