Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00261 ATGAGGAAGTGGACGATCGTTTCTGCTCTTCTCCTTCTTTGCTTTCTCTCCCTCGTACCTGATGAAGGTTCTAGATTTCATGCCAAGGCCGACGGTGATGCCGACGAGGTTGTAGATCCACCAAAGGTCGAGGAAAAGATCGGCGCCGTTCCGCATGGTCTCTCCACCGATTCTGATGTCGTCAAGAGGGAGTCGGAGTCCATCTCGAAGAGATCTCTTCGAGGCAGCGCGGAGAAATTTGAGTTCCAAGCTGAGGTGTCTCGTCTCATGGACATTATTATCAATTCCTTGTATAGTAACAAAGACATTTTCCTCCGAGAATTGATCTCCAACGCTTCTGATGCGTTGGATAAGATTAGGTTCCTTTCCCTGACCGATAAAGAGATCTTGGGTGAAGGCGACAACTCGAAGCTGGAGATTCAAATTAAGTTGGACAAAGCAAACAAAGTCCTTTCGATTCGCGACAGAGGTATTGGTATGACGAAAGAGGATTTGATTAAGAACTTGGGAACTATAGCGAAATCTGGAACTTCAGCATTTGTGGAAAAAATGCAGACAAGCGGTGATCTCAATCTTATTGGCCAATTTGGAGTAGGTTTCTACTCCGTGTATCTTGTGGCTGACTACGTCGAAGTGATCAGTAAACACAACGATGACAAACAACATGTGTGGGAGTCCAAGGCTGATGGAGCATTCGCCATCTCTGAAGATACTTGGAATGAACCTTTAGGCCGCGGAACTGAAATTAGATTGCACCTTAGAGATGAAGCTCAAGAATACCTGGAGGAGGGCAAACTGAAAGATTTGGTGAAGAGATATTCAGAATTTATCAACTTCCCCATTTATATCTGGGGAAGCAAAGAGATTGACGTGGACGTTCCTGCAGATGAGGATGAATCCAATGATGAAGAAGCACCGCCTGAAAGCTCTTCGGAAGAAGAGGAAGATGATGCAGAAAAGAGTGAAGATGATGAGGCTGAGAAGTCAAAGACGAAGAAAGTCAAAGAAACAATTTATGAATGGGAGCTTTTGAATGATGTGAAAGCCATATGGCTGCGGAGTCCCAAAGAAGTGACAGAGGAAGAGTATACTAAATTCTACCACTCTCTTGCTAAGGATTTTAGTGATGACAAGCCTATGTCATGGAGTCACTTCAATGCAGAAGGTGATGTTGAGTTCAAAGCTGTTCTGTTTGTGCCTCCTAAGGCTCCTCATGATCTCTACGAGAGCTACTATAACAGCAAAAAATCCAACTTGAAGCTGTATGTTCGAAGGGTTTTCATCTCAGATGAGTTTGATGAGCTTCTGCCGAAATATTTGAACTTTTTGCTGGGTCTTGTTGATTCTGATACTTTACCCCTCAACGTTTCACGAGAAATGCTCCAACAACACAGCAGCCTGAAGACAATTAAGAAGAAACTCATTCGCAAGGCCCTTGATATGATCCGTAAAATTGCTGAAGAGGATCCTGATGAGTTCAGTGACAAGGAGAAGAAAGCTGCAGAGAAGAGTAGTGATGATGATGAGAAGAAAGGCCAGTACAGTCGATTCTGGAATGAGTTCGGCAAATCAATTAAACTTGGTATTATTGAGGACGCGACTAACAGAAACCGTCTAGCAAAACTGCTCCGATTCGAGAGCTCCAAGTCGGATGGCAAATTGATTTCACTGGATCAGTATATTTCAAGAATGAAATCAGGACAAAAGGATATCTTTTACATTACTGGCTCAAGCAAGGAACAGTTGGAGAAATCCCCATTCCTTGAGCGTCTTAAGAAGAAGAACTATGAGGTTATCTTTTTCACGGATCCGGTTGATGAGTACTTGATGCAATATCTCATGGACTATGAAGACAAAAAATTCCAAAATGTATCGAAGGAGGGTCTCAAACTAGGCAAAGACTCGAAGGATAAAGAACTCAAGGAGTCCTTCAAGGATCTTACTAAATGGTGGAAGACCGCCCTTTCTTTCGACAACGTTGACGATGTCAAAGTTTCGAATCGTTTGGATAACACACCTTGTGTGGTTGTGACATCCAAGTATGGATGGAGCGCTAATATGGAGAGGATCATGCAGTCTCAGACCCTATCAGATGCTAGCAAACAAGCATATATGCGCGGTAAGAGGGTGCTCGAGATCAACCCAAGGCACTCGATCATCAAGGATCTTCGGGAGAGGATAGTCAAGGATTCGGAGGACGAGGGCGCAAAGCATGCTGCAAAACTGATGTACCAGACAGCTCTTCTGGAAAGCGGGTTTATTCTCAGTGATCCCAAGGATTTTGCCTCCCAAATCTATGACACGGTGAAGACTAGCTTAAACATCAGTCCCGACGCAACCATTGAAGAGGAAGATGAAGCAGAAGTCGTCGAGACTGGATCGAAGGCTGCAGAAGCTGAAGATACTATCAAATCGGAAACAGCCGATGAGGGCGTAAAGGATGAGCTGTAG 2451 44.15 MRKWTIVSALLLLCFLSLVPDEGSRFHAKADGDADEVVDPPKVEEKIGAVPHGLSTDSDVVKRESESISKRSLRGSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNSKLEIQIKLDKANKVLSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAQEYLEEGKLKDLVKRYSEFINFPIYIWGSKEIDVDVPADEDESNDEEAPPESSSEEEEDDAEKSEDDEAEKSKTKKVKETIYEWELLNDVKAIWLRSPKEVTEEEYTKFYHSLAKDFSDDKPMSWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNSKKSNLKLYVRRVFISDEFDELLPKYLNFLLGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEFSDKEKKAAEKSSDDDEKKGQYSRFWNEFGKSIKLGIIEDATNRNRLAKLLRFESSKSDGKLISLDQYISRMKSGQKDIFYITGSSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESFKDLTKWWKTALSFDNVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHSIIKDLRERIVKDSEDEGAKHAAKLMYQTALLESGFILSDPKDFASQIYDTVKTSLNISPDATIEEEDEAEVVETGSKAAEAEDTIKSETADEGVKDEL 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1451583 1455848 + Carg09398-RA Car05g00261 148647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00261 816 MobiDBLite consensus disorder prediction 790 816 - -
Car05g00261 816 Hamap Chaperone protein HtpG [htpG]. 75 770 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Car05g00261 816 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Car05g00261 816 MobiDBLite consensus disorder prediction 778 816 - -
Car05g00261 816 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Car05g00261 816 Pfam Hsp90 protein 259 799 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Car05g00261 816 MobiDBLite consensus disorder prediction 294 322 - -
Car05g00261 816 MobiDBLite consensus disorder prediction 294 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00261 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - csv:101203607 1442.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00261 Car12g00379 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00261 Car-Chr5:1451583 Car15g00797 Car-Chr15:4525519 0 dispersed
Car12g00379 Car-Chr12:2414917 Car05g00261 Car-Chr5:1451583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00261 Car_Chr05 FPKM 7.219745 7.959759 9.837793 10.947259 8.812883 7.790234 9.61217 12.595451 12.674563 13.196149