Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00262 ATGGGTTTGCTTAGTAGTATACTGGGTTTCTTCGGATTTGGCTTGGGAACTTCGATTGGGATTGTGATTGGATATTACATGTTCATCTATTTTCAGCCGTCGGATGTCAAGGATCCTGTTATTCGCCCTTTGGTTGAGCAAGATACGAGCTCGTTGTTGCGGATGATGCCGGAAATACCTCTGTGGGTGAAAAATCCTGATTACGATCGTATTGATTGGCTCAACAAATTCCTTGAACTTATGTGGCCTTACTTGGACAAGGCCATTTGTAAGACAGTGAAGAACATAGCAAAGCCTATTATTGCTGAGCAAATTCCAAAATACAAAATCGAGGCTGTTGAATTCGACACGCTTACATTGGGCTGCTTACCACCCACTCTTCAAGGAATGAAAGTTTATACGACTGATGATAAAGAGTTGATCATGGAGCCATGCATGAAGTGGGCGGGAAATCCGAATGTTACCGTTTCAGTTAAAGCATTCGGATTGAAAGCGACTGTTCAGGTGGTCGATTTGCAAGTGTTTGCTATTCCGCGTATAACCCTGAAGCCTTTGGTCCCGACGTTTCCATGCTTCGCCAAAATATTTGTCTCTCTAATGGAGAAGCCCCATGTCGATTTTGGGCTGAAATTGCTCGGTGCAGATGCGATGGCCATCCCGGGGCTGTATAGGTTTGTTCAGGAACTCATAAAAGATCAAGTTGCCAATATGTATCTATGGCCGAAGACCCTCGAAGTACCGATAATGGATCCTGCGAAAGCCATGAAGAAACCTGTTGGCATCCTTCATGTGAAGGTTTTGAAAGCAATGAAGCTGAAAAAGAAGGATCTATTTGGGGCTTCTGATCCATATCTGAAACTGAAGCTCACTGAAGACAAGCTTCCTTCTAAGAAAACGACTGTGAAACACACGAATTTGAACCCGGTTTGGAACGAGGAGTTTACTTTTGTCGTGAAAGATCCCGAGTCTCAAGCTTTGGAACTGATTCTTTACGATTGGGAGCAGGTTGGGAAGCATGATAAGATGGGAATGAATGTTGTTCCACTGAAAGAACTTACACCTGAGGAGTCCAAGGAATTGACTCTTGAAGTGTTGAAAAATATGGATCCTAACGATACACAAAACGAGAAGTCGAGAGGGCAGCTTGTCGTGGAATTGTTGTACAAACCTTTCAAGGACGACGAAGCTCCGAAAGATGATGGTGATGATGCAGCAGCAGTACAAAAGGCTCCCGATGGAACGCCCGATGGTGGAGGCTTGCTTGTTGTCATAATCCATCAAGCTGAAGATGTGGAAGGGAAGCATCATACGAACCCCTACGTTCGTTTACTTTTCAGAGGAGAGGAGAAACGAACTAAGCATGTTAAGAAGAACCGGGATCCAAGATGGGACGAGGAGTTCCAGTTTACGCTCGAGGAGCCACCGGTGAACGATCGGATTCATGTGGAAGTACTGAGTGCATCTTCAAGGATAGGCCTGCTTCACCCCAAGGAAACTTTGGGGTATGTGGACATAAACTTAGCTGATGTCGTCTCAAACAAGAGGATTAATGCGAAATATCATCTGATCGACTCGAAGAACGGGAAGATCCAAATCGAGCTACAATGGAGAACTTCATCATAG 1623 44.67 MGLLSSILGFFGFGLGTSIGIVIGYYMFIYFQPSDVKDPVIRPLVEQDTSSLLRMMPEIPLWVKNPDYDRIDWLNKFLELMWPYLDKAICKTVKNIAKPIIAEQIPKYKIEAVEFDTLTLGCLPPTLQGMKVYTTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLLGADAMAIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILHVKVLKAMKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPVWNEEFTFVVKDPESQALELILYDWEQVGKHDKMGMNVVPLKELTPEESKELTLEVLKNMDPNDTQNEKSRGQLVVELLYKPFKDDEAPKDDGDDAAAVQKAPDGTPDGGGLLVVIIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDRIHVEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGKIQIELQWRTSS 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1456369 1459777 - Carg09397-RA Car05g00262 148648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00262 540 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Car05g00262 540 ProSiteProfiles C2 domain profile. 399 520 IPR000008 -
Car05g00262 540 MobiDBLite consensus disorder prediction 393 413 - -
Car05g00262 540 Pfam C2 domain 260 360 IPR000008 -
Car05g00262 540 Pfam C2 domain 420 522 IPR000008 -
Car05g00262 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Car05g00262 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00262 - - - cmax:111491745 1033.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00262 Car-Chr5:1456369 Car18g00820 Car-Chr18:9252871 0 dispersed
Car12g00378 Car-Chr12:2409471 Car05g00262 Car-Chr5:1456369 0 wgd
Car19g00564 Car-Chr19:7138109 Car05g00262 Car-Chr5:1456369 0 wgd
Car20g00656 Car-Chr20:3701608 Car05g00262 Car-Chr5:1456369 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00262 Car_Chr05 FPKM 8.040816 5.603051 11.883833 9.86473 8.175287 5.820995 8.613964 7.806215 8.164124 9.784241