Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00269 | ATGGCGAAACTTCCTTTGATCTTCGCTTTTTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCTCCTAACTATGCTCTGCCCAACAACAATGGCGTTTTGATAAGCAACGTGGGAGGGGCTGGATCCATCCAATCGGTATCCATCAAAGGCTCCAAATCCGGCAATTGGACGCCAATGTCGAGGAATTGGGGCGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGATCACCACTAGCGATGGCCAGACCAGAGTGTTCAATAATGTTGTGCCTTCAAGCTGGCGGTTCGGCCAGACATTTGGAAGCAAGGTCCAATTCAGCTGA | 612 | 52.94 | MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGVLISNVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNVVPSSWRFGQTFGSKVQFS | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1485984 | 1487340 | + | Carg09390-RA | Car05g00269 | 148655 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00269 | 203 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 118 | 198 | IPR007117 | - | |
| Car05g00269 | 203 | Pfam | Lytic transglycolase | 65 | 112 | IPR009009 | - | |
| Car05g00269 | 203 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 48 | 121 | IPR007112 | - | |
| Car05g00269 | 203 | Pfam | Expansin C-terminal domain | 119 | 187 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00269 | Car-Chr5:1485984 | Car04g00102 | Car-Chr4:560825 | 2.30E-78 | dispersed | |
| Car12g00373 | Car-Chr12:2376033 | Car05g00269 | Car-Chr5:1485984 | 1.39E-118 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00269 | - | - | pvy:116123835 | 296.589 |