Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00274 ATGGAAGGGTTTTCGAAGCTAACCCATTTGTTGATGATGGGTTTTCTATACACTTTCGCAACCACGATGGTCATTCCGGCTATTACCGATGTCACCATGTCGGCTCTTTGTCCCGGTCGAGACGAGTGTTCCGTGGCCATTTACTTTACTGGGTTTCAACAAGTCGTGACGGGGCTTGGTGCGTTTATTATGATGCCATTGCTTGGTAACCTCTCGGATAGGCTTGGGAGGAAGACTCTGCTCACTATTCCCATGATTCTCACTATCGTTCCCCTCGGGATTCTGGGGTATGGTAGGTCGAGGCATTTGTTCTACGTTTATTTTGTGTTGAAGTGTGTGACGAGTACGGTTTGTGAAGGGAGCGTTCAGTGCTTGGCAATTGCTTATGCGGCCGACAATGTACCGGCACACCAGCGAGCTTCTGCGTTCGGATTGCTATCGGCCGTTGGATCTTCTGCTTTCGTTTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTTCATCCACTTTTCAGGTAGCGGCTTCCGTAGCGGCTGCTGCGGTAGTGTATATGAGGCTTTTCCTTACTGATTCTATCGCCGATTGCAATCTTTCTGCTCCGCTAGTATCCGGGGAGAATGTAGAATCTGTTTCTTCGGATCCAGTTTCGCCCAGAAAAGAAAAGGTTATTACCGCATTTCCTTCAGTGAAGGACCTTTTTGCACTGTTGAAGACTAGCACGACAAAACAAGCAGCCATCGTTGCATTTTTTGGCAATCTCGCCGATGTTGGTCTTCATGCTTCAATACTGTACTATTTAAAAGCCAGATTTCACTTTAACAAGGATAAGTTTGCTGATTTGCTGATGATTTCTGGGGCTGCTTCGACTTTTTCACAGGCACGAGAGGAAAGGCTGCTCTCAGTTGGGCTCTTTTTCAACTGCGTTCATATGCTTCTTCATAGCATTGCTTGGGCTGACTGGGTTGCCTATGTTGCTACAATGTTTTCCGTTTTGTTCGTTTTCTGGCAGCCTTGCCTGCGAAGCATAGTGTCAAAACAAGTTGGTGCAAGCGAGCAGGGTATGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAATGTTGTTTCTCCATTGGTTTTCTCTCCTTTAACTGCTTTGTTTCTCTCCGAAAACGCTCCATTTAATTTCCCTGGATTTAGCATCATGTGTGCTGGATCTTCTGCGGTAAGAATCTTTTTTCCACTCCATTAA 1233 46.31 MEGFSKLTHLLMMGFLYTFATTMVIPAITDVTMSALCPGRDECSVAIYFTGFQQVVTGLGAFIMMPLLGNLSDRLGRKTLLTIPMILTIVPLGILGYGRSRHLFYVYFVLKCVTSTVCEGSVQCLAIAYAADNVPAHQRASAFGLLSAVGSSAFVCGTLCARFLSISSTFQVAASVAAAAVVYMRLFLTDSIADCNLSAPLVSGENVESVSSDPVSPRKEKVITAFPSVKDLFALLKTSTTKQAAIVAFFGNLADVGLHASILYYLKARFHFNKDKFADLLMISGAASTFSQAREERLLSVGLFFNCVHMLLHSIAWADWVAYVATMFSVLFVFWQPCLRSIVSKQVGASEQGMAQGCISGISSFANVVSPLVFSPLTALFLSENAPFNFPGFSIMCAGSSAVRIFFPLH 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1501788 1506486 + Carg09385-RA Car05g00274 148660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00274 410 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Car05g00274 410 Pfam Major Facilitator Superfamily 10 371 IPR011701 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00274 - - - cpep:111805071 742.651
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00274 Car-Chr5:1501788 Car07g00672 Car-Chr7:3423116 8.84E-93 dispersed
Car19g00589 Car-Chr19:7287377 Car05g00274 Car-Chr5:1501788 2.63E-146 wgd
Car20g00636 Car-Chr20:3561224 Car05g00274 Car-Chr5:1501788 1.23E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00274 Car_Chr05 FPKM 0.048748 0.197723 1.747219 1.770894 0.11816 0.0 0.0 9.814063 12.632862 8.543001