Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00275 ATGAATGGTAATGATGCGGAGCCGTTGGTGTACGTGCACGGCGATCTCGAATTGAAGATCATTGAGGCGCGGCGTTTGCCTAATATGGATTTGCTAACGGAGCGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAAGGATGAGGATGAACACAAGCCCCACCGGAAGATTATTACTAGTGATCCTTACGTCACCGTTTGTCTTGCGGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTATCTGGAACGAGCACTTCAAAATATCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTGAAGGATAACGATGTGTTTGGTGCGGATTTGATTGGCATTGCGACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAGTCATAGATGATTGGTTTCCGATTATCGGTTCGTTTGGGAAACCGCCGAAGCCGGATTCGGCTGTACGCTTGGAAATGAAATTCACGAAGTGCGAGGACAATCCTCTGTACCGTCAAGGCATTGCAGCCGATCCCGAACATTTTGGCGTTCGGAATTGCTATTTCCCGGTACGCCATGGGGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCCGATAACATGTTGGAGGAGATTGAATTGGAAAAGGGGAATTTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCCATTTTGGAGGCTCACCATTTAGTCTACATCGCTGGTTGGTCCATATATCATAAGGTGAAATTGGTGAGAGAGCCTTCAAAGCCGTTGCCCAATGGTGGGGATTTGAACTTGGGAGAGTTGCTCAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATTAACACGACTGGAGTGATGCAGACGCATGATGAGGAGACCCGGAAGTTCTTCAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGCACGCTTTATACCATGGTTCAGTTACATGTTGGTTGTTGGAACGCTTTTCACCCATCACCAAAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTGCTTTTATTGGAGGACTTGACCTATGCGATGGTCGTTACGATACTCCCGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGAGGATGATTATCATAATCCAACTTTTTCCGGAGGTGCAAAGGGTCCGCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCAGCATATGACGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGGTTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGTATATCTTGGATACTCAGTCCATCTCAGTCAGTCCCTAACGACGATCCATTGTTATGGGTTTCCGAGGAAAATGATCCCAACAATTGGCATGTTCAGGTTTTCCGGTCCATAGATTCAGGATCTTTGAGAGGATTTCCCAAAGATGTTTTTCAAGCCGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCTATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTAGGATCGTCGTTTGCGTGGCCTGCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGTATTGAAGATTGCTAGTAAGATAAGAGCCAATGAGAGGTTTGCTGTATACATTGTGATACCAATGTGGCCTGAAGGGGCTCCCAGTTCTGTTTCTGTTCAAGAAATATTGTTCTGGCAGGGCCAGACAATCCAAATGATGTATGAAATCATTGCACGTGAGTTGAAATATAAGAATCTCGAGAACGCTCATCCCTCAGACTACTTGAACTTTTACTGTCTCGGCAATAGGGAACCGCACAACGACTTATCATGCTCCTCTACTCATTCTCTCAAGAGTGAAGATTTGACTTCAGACTCGCAAAAGTTCCGAAGATTCATGATATACGTGCATGCGAAAGGAATGATTGTCGACGACGAGTATGTAATAGTAGGGTCTGCTAACATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTAACACATGGGTTAAGAGGAAACGACATCCACGAGGCCAGGTTTATGGCTATAGAATGTCGCTGTGGGCCGAACATTTAGGAAACATCGACAGTTGCTTCAAGGAGCCAGAAAGTTTGGCTTGTGTGAAAGCAGTGAACAAGATAGCTGAAGATAACTGGAAGAAATACACAGCAGAGGAGTTTAAGCCATTGCAAGGACACCTCCTGAAGTACCCGATTGATGTGAGCCAAAGTGGGAGGGTTGGGCCATTGAGTGGACACGAGACATTCCCTGACTTCGGTGGTAAGGTCCTTGGGGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 2574 45.42 MNGNDAEPLVYVHGDLELKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKKDEDEHKPHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKISLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGEVIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRQGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDNMLEEIELEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGDLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQARFIPWFSYMLVVGTLFTHHQKCVIVDTQASGNYRKISAFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDYHNPTFSGGAKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSEENDPNNWHVQVFRSIDSGSLRGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPAYKEAGADNLIPMELVLKIASKIRANERFAVYIVIPMWPEGAPSSVSVQEILFWQGQTIQMMYEIIARELKYKNLENAHPSDYLNFYCLGNREPHNDLSCSSTHSLKSEDLTSDSQKFRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSNTWVKRKRHPRGQVYGYRMSLWAEHLGNIDSCFKEPESLACVKAVNKIAEDNWKKYTAEEFKPLQGHLLKYPIDVSQSGRVGPLSGHETFPDFGGKVLGARSNLPDALTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1508172 1513288 + Carg09384-RA Car05g00275 148661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00275 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Car05g00275 857 Pfam Phospholipase D C terminal 777 847 IPR024632 -
Car05g00275 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Car05g00275 857 ProSiteProfiles C2 domain profile. 1 144 IPR000008 -
Car05g00275 857 Pfam PLD-like domain 557 739 IPR025202 -
Car05g00275 857 Pfam Phospholipase D Active site motif 361 395 IPR001736 GO:0003824
Car05g00275 857 Pfam C2 domain 14 146 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00275 Car-Chr5:1508172 Car08g00824 Car-Chr8:5496173 0 dispersed
Car08g01119 Car-Chr8:7572827 Car05g00275 Car-Chr5:1508172 7.99E-17 dispersed
Car03g00601 Car-Chr3:5595886 Car05g00275 Car-Chr5:1508172 0 wgd
Car05g00275 Car-Chr5:1508172 Car07g00350 Car-Chr7:1750871 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00275 K01115 - csv:101213442 1646.71