Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00276 ATGGCTCCTGATTTGGTACTCAGGCCAATGATTAGCCACAAAGACTGTACATCTGCCTACCCATGGGCACCAACAACCGCCATGGTGGAGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGGAATGTTCAATTCTGTACAATTTCTTCAACCAATCAAGAACACAGTACCCACTTCTTCTTCGGCCATTTCACCCGATTCGTCAATGCGTAGCTGCAGAAGCGCTTGTTTCAGCGTTAGTGATCGCGGTAAAATCGTGCACTTCCATCTCAAGTTGCCGGCGAATTCATGCCCGTGTAATCAAGTCTTTTCTTTATAGAGATGGATTCATTGGGGATCAGCTGGTCTCTTGTTATAATAAACTGGGTTATGCTGAGGATGCACAGAAGGTGTTTGATGATATGCCTGATAGAGATTTGGTTTCTTGGAACTCACTGATTTCTGGGCTTTCCCGGTGCCTTCATGTAACTCTCAAAGCCTTTTGTACCATGAAGTTTGAAATGTCGGTTAAACCCAATGAGGTAACAATTCTATCGATGATATCGGCTTGCAACGGAGCTTTGGATGTAGGGAGGTATGTTCATGGCTTTGCAAGTAAAATTGGTGTTTCTTTGGAAGTTAAGGTCGTTAATTCTCTCATTAACATGTATGGAAAGTCTGGGGATTTAACATCTGCTTGTAGATTATTTGAGGCTATTCCATACCCAAATATAGTGTCGTGGAATTCAATCATTGCTGCTCATGTTACTAATGGCTGTGCAGGAGAAGGAGTTCATTGTTTTAATAAGATGAGAATGTTTGGAATGGAGCCGGATGAAGGAACTATCCTGGCTCTGCTTCAAGCTTGCGTGCATTTGGGTGTAGGAAAGTTGGCTGAAAGCATTCATGGGTTAATCTTCTGCTCTGGTCTAGGTGCACAAATCACCATAGCCACTGCACTTTTAGATTTGTATGCGAAATTGGGAAGATTAAGTGCTTCATATGATGTCTTTGGGGAGGTGGGTTGTGCAGACAGAGTTGCTTGGACTGCCATGCTTGCAGGATATGCCGCACATGGGTTGGGTAGGGAGGCTATCAAGCTTTTCGAGAGCATGGCCGAGAGAGGCTTGGAGCCTGATCATGTCACTTTTACTCATTTGCTTAGCGCATGTAGTCATTCAGGGCTAGTCAGAGAGGGGAAACGTTACTTCAATTTGATGTCTGAGGTATATGGAATTGAGCCCAGGATAGATCATTATTCATGTATGGTTGATCTACTCGGTCGCTGTGGACTTTTGAATGATGCTTATGAGGTGATACGAAGCATGCCTATGGAGCCCAATGCTGGCGTGTGGGGTGCTCTTCTTGGTGCTTGTAGGGTCTATGGTAACATAGAACTTGGTAAGGAAGTTGCAGAGCATTTGATTCATTTGGAGCCTCTGGACCCCAGAAATTACATCATGTTATCAAATATGTATGCAGCAGCTCGTTCTTGGAAGGATGCTGCCAAAGTGAGGGCCTTGCTAAAGGAGAGAGGCCTGAAAAGAACCCCTGGATGGAGCTCCATTGAATATGGAAACAAGATCCACCAGTTCTTCGTGGGCGATCGATCTCACCCCGAGACGGAGAAGATCTATTCCAAGCTTGAAGAATTGCTTGTAAAGATAAGGAAAACTGGATATAGTTCCAAAACAGAATATGTTCTGCAAGACGTTGAAGAGGAAATCAAGGAGGATATGATAAACAAGCACAGCGAGAAGTTAGCCATTGCTTTTGGGCTTTTGGTGAGTAAAGAAGGAGACCCTTTAATCATTACAAAGAATCTTAGAATTTGTGGAGATTGTCATAGCACTGCAAAGCTCATATCATTGATTGAGAAGCGCACCATTATCATCCGAGATCCAAAACGCTTTCACCATTTCTCGAATGGATTCTGTTCTTGTTCAGATTACTGGTAA 1944 43.52 MAPDLVLRPMISHKDCTSAYPWAPTTAMVESKIRITLLIEYLKECSILYNFFNQSRTQYPLLLRPFHPIRQCVAAEALVSALVIAVKSCTSISSCRRIHARVIKSFLYRDGFIGDQLVSCYNKLGYAEDAQKVFDDMPDRDLVSWNSLISGLSRCLHVTLKAFCTMKFEMSVKPNEVTILSMISACNGALDVGRYVHGFASKIGVSLEVKVVNSLINMYGKSGDLTSACRLFEAIPYPNIVSWNSIIAAHVTNGCAGEGVHCFNKMRMFGMEPDEGTILALLQACVHLGVGKLAESIHGLIFCSGLGAQITIATALLDLYAKLGRLSASYDVFGEVGCADRVAWTAMLAGYAAHGLGREAIKLFESMAERGLEPDHVTFTHLLSACSHSGLVREGKRYFNLMSEVYGIEPRIDHYSCMVDLLGRCGLLNDAYEVIRSMPMEPNAGVWGALLGACRVYGNIELGKEVAEHLIHLEPLDPRNYIMLSNMYAAARSWKDAAKVRALLKERGLKRTPGWSSIEYGNKIHQFFVGDRSHPETEKIYSKLEELLVKIRKTGYSSKTEYVLQDVEEEIKEDMINKHSEKLAIAFGLLVSKEGDPLIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSNGFCSCSDYW 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1514073 1518364 + Carg09383-RA Car05g00276 148662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00276 647 Pfam DYW family of nucleic acid deaminases 555 647 IPR032867 GO:0008270
Car05g00276 647 Pfam E+ motif 524 550 IPR046849 -
Car05g00276 647 Pfam PPR repeat family 340 387 IPR002885 -
Car05g00276 647 Pfam PPR repeat family 238 286 IPR002885 -
Car05g00276 647 Pfam PPR repeat 143 155 IPR002885 -
Car05g00276 647 Pfam PPR repeat 414 439 IPR002885 -
Car05g00276 647 Pfam PPR repeat 117 141 IPR002885 -
Car05g00276 647 Pfam PPR repeat 213 233 IPR002885 -
Car05g00276 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Car05g00276 647 Pfam E motif 457 519 IPR046848 -
Car05g00276 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00276 - - - cmos:111462403 1201.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00276 Car-Chr5:1514073 Car06g00427 Car-Chr6:2375129 8.33E-160 dispersed
Car05g00276 Car-Chr5:1514073 Car16g00226 Car-Chr16:1270754 2.45E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00276 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 1.243392 0.0 0.0 0.0 0.0 0.0