Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00277 ATGAACTACTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCCGACCAGCTTCACCTCCTTGGAAAAGCTGAGGTTTTTAAACTCCATGGTCGTGATAGAGCTGGCCGCAATGTGTTCCTCATTGTCGGAAAACACTTTCCAGCTCGGTTCGTGAGCACCCAGGCTGTGAATCTCTATCTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCCTTCACGTTGGTGTACATTCACACAGATGTTCATTGGACAGAGAATTTCCCTGGAATCTCCAATCTCAAGGCAATCTATGAGTTCATTCCAACCACCATTAAGAACAACCTTAAAGCTGTTTATTTTGTCCACCCCAGTTTGCAGGCTCGTCTGTTCTTCGCCACTGTCGGCCGCCTAATTCTGGGCGCCGAGCTGTATAACAAAGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAGTATGTTAGAAGGAAAGAGATAGAGTTACCGGAGTTTGTGTATGATTATGATGAGAAATTGGAGTTCTGTCCTGTGATGGACTCTGGTTTGGAGAGTGATTATCTCAGGCTCTTCTCCGCCTCGCCGTCTGTGGATTCTGCGGTTTCTACGTACTCCTCCATGAGGTGTTTTGCTTGA 639 45.54 MNYSVSSSSSSSSSLSDQLHLLGKAEVFKLHGRDRAGRNVFLIVGKHFPARFVSTQAVNLYLKDKIFPFLKDGPFTLVYIHTDVHWTENFPGISNLKAIYEFIPTTIKNNLKAVYFVHPSLQARLFFATVGRLILGAELYNKVKYVKRVEFLWEYVRRKEIELPEFVYDYDEKLEFCPVMDSGLESDYLRLFSASPSVDSAVSTYSSMRCFA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1519213 1520030 + Carg09382-RA Car05g00277 148663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00277 212 Pfam Divergent CRAL/TRIO domain 37 172 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00277 - - - cpep:111805858 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00277 Car-Chr5:1519213 Car16g01197 Car-Chr16:10120719 6.56E-78 dispersed
Car05g00277 Car-Chr5:1519213 Car05g00810 Car-Chr5:7767224 3.21E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g145 . . . . . . . . Cmo05g00333 . . . . . . . . Bhi04g00086 . . . . . . Cla08g01391 Cam08g1864 Cec08g1443 Cco08g1576 Clacu08g1558 . Cre08g1342 . . Cone17ag1433 Cone20ag0050 . . . . . . . . . . . . . . . . Cma05g00330 Car05g00277 . . . . . . . . . . . . . . . . . Lsi08g01282 . Chy03g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002691 0 2 0 1 1 2 3 2 2 2 2 2 3 1 2 4 2 1 3 2 2 2 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00277 Car_Chr05 FPKM 0.712891 0.657223 1.480017 1.10358 8.820038 7.990843 7.942286 0.169472 0.189091 0.146732