Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00282 ATGGCTTCGAAGCTTTGTGATTCGTGTAAGTCCGCCACCGCTACTCTCTTCTGCCGAGCCGACTCTGCCTTCCTTTGCCTTGGCTGTGATTCCGAAGTTCACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCTGATGCCGCTGCTCTCTGCCTCGCTTGTGACCACGATATTCATTCTGCTAATCCCCTCGCACGCCGTCACGAGCGAGTTCCGGTCACGCCGTTCTACGACACCTCCAACTCCGAGAACTCCCTCGCTGTCAAGCCTGGCGCTGCAATCAACTTCCTCGACGACCGCTACTTCTCTGATGTCGATGCCGATGCCGCTGATGTCAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTCCAGATTTAAACTCGGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAGAATAGCTCTGGTGCCGATGGAGTTGTTCCTGATCAGACCAAAGGCGTCCATCTCGCATCAGTTAACGATCGCTGCTTCAACATAGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTTCAATCCTCAGTCAATCAGTCACAGTGTATCATCTTCGTCAGTCGAGGTTGGAGTCGTGCCAGACGGTAACGCAATGACGGATGTATCAAATCCGTACACAAAACCGTCGACGGAATCGTCGATTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCGTACGCCGAGACGCGACCTCGAATCAAAGGACGGTTCGCCAAAAGGACGGACATCGAACTCGAGGTTGACCGAGTGAGTGGATACGGCGTCGTTCCGTCATTCTAA 1014 53.45 MASKLCDSCKSATATLFCRADSAFLCLGCDSEVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPDQTKGVHLASVNDRCFNIDFPGAKSFPYGFNPQSISHSVSSSSVEVGVVPDGNAMTDVSNPYTKPSTESSIQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1566450 1567778 + Carg09377-RA Car05g00282 148668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00282 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Car05g00282 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Car05g00282 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Car05g00282 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Car05g00282 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Car05g00282 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00398 Car-Chr1:2285252 Car05g00282 Car-Chr5:1566450 7.00E-33 dispersed
Car05g00282 Car-Chr5:1566450 Car10g00391 Car-Chr10:1943234 2.47E-104 dispersed
Car20g00519 Car-Chr20:2864080 Car05g00282 Car-Chr5:1566450 2.86E-09 dispersed
Car05g00282 Car-Chr5:1566450 Car02g00898 Car-Chr2:6373712 1.47E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3537 PF00643 zf-B_box 5.30E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00282 - - csv:101208063 616.305