Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00293 ATGGCTGGTTCTTCAAGAGCTCTGTTTCTTCTCACCTTCCTCCTCTTCAGCTTCTCAGAAGCTACAGAGATTCTGGTCGGAGGCAAACCCAATGCCTGGAAACTCCCATCTTCCCAATCTCAGTCACTCAATCAATGGGCCGAAACCTCCCGCTTTCGCGTCGGCGACACTCTCGTGTGGAGCTACGAAGAAGGAAAAGATTCGGTACTGAAAGTGGGAAAGGAAGATTACGAAGCCTGCAACACCCAAAACCCAGAACAGAGGTTCGAGGATGGGAACACAAAGGTCGAGCTACACAAACCAGGCCCATTCTACTTCATCAGTGGCGCAAAGGGTCACTGCGAACAGGGTCAGAAGCTGGTCGTCGTCGTTGTGACTCCTCGCCGGAGATTCGTCAGCTTCTCCCCGGCGCCTTCTCCGACCGAGATTGAGGCTCCCGCGGTTGCTCCGTCGAGTGGTGCGGCGAGTTTTAATGTTGGGTTTTTAGCGGCGGCTGTCGGAATCTTGGGTCTTGGAGTTGGTTTCCTCTGA 531 53.86 MAGSSRALFLLTFLLFSFSEATEILVGGKPNAWKLPSSQSQSLNQWAETSRFRVGDTLVWSYEEGKDSVLKVGKEDYEACNTQNPEQRFEDGNTKVELHKPGPFYFISGAKGHCEQGQKLVVVVVTPRRRFVSFSPAPSPTEIEAPAVAPSSGAASFNVGFLAAAVGILGLGVGFL 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1619451 1620376 - Carg09366-RA Car05g00293 148679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00293 176 Pfam Plastocyanin-like domain 33 118 IPR003245 GO:0009055
Car05g00293 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00293 - - - csv:101210664 248.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00293 Car12g00349 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00293 Car-Chr5:1619451 Car16g00852 Car-Chr16:6228714 4.76E-35 dispersed
Car05g00293 Car-Chr5:1619451 Car12g00349 Car-Chr12:2220059 6.96E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car05g00293 CCT 9 170 Phytocyanin Superfamily AT5G25090 50.9 1.1e-38 157.1
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car20g00109 . 19 229 Phytocyanin Superfamily AT1G08500 59.0 7.5e-63 237.7
Car10g00876 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00293 Car_Chr05 FPKM 22.389668 25.639439 17.392673 19.101088 23.418085 26.156525 23.729094 15.159184 14.132751 13.614965