Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00294 ATGAAGTTCATGAAGTTAGGATCGAAACCGGACGCTTTTCTAGCCGATGGAAAAACCACTCGGTATGTTTCATCAGAATTGCCCACGGACGTTACCATTTTTGTTGGTGAAGTGAAGTTTCGTGTTCATAAGTTTCCTCTGTTGTCCAAAAGCAATTGCTTGCAAAAACTAGTATCGAAAGCCAATGAGGAGAACTCGGAAGAAATTCATCTGATTGATTTTCCTGGTGGACCCAAGGCATTTGAAATCTGCGCAAAGTTTTGCTATGGAATCACTGTTACTCTTAATGCCTATAATGTTGTGGCTGCTCGTTGTGCTGCTGAATTCCTCGAAATGACTGAGGATATCGAAAAAGGAAACCTTGTATTCAAGATCGAGGTGTTCCTAAACTCTAGCATCTTTCGTAGTTGGAAAGACTCCATCATTGTGCTCCAAACATCCAAATCTCTTCTTCCATGGTCTGAAGATTTGAATATTGTAGGGAGATGTATCGATTCGATTGCCTCGAAAACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATATAACAGGAAGCTAGCAGAGGTAGATAGAATCGTAGATGATGGAATGAAGGGTCAAAAGAAAATTGACTGTGTACCAAACGACTGGTGGGTTGAAGATGTTTGTGAGCTAGAGATTGATCTGTATAGGCGTGTTATGATTGCTGTGAAATCAAAGGGAAGAATGGACGGTTCTGTAATTGGGGAGGCGCTTAAAACTTATGCTGTTAGATGGCTACCAGACACTGTAAATGCTTTGGCCTCTGATGCCCATATTAAGAGGAACAGGTCTCTCATTGAAACAATCATTTGCTTATTGCCATCCGACAGAACCACAGGATGCTCATGCAGTTTCTTGCTCAAACTCATGAAGGTTGCCATTTTGGTCGGAGCCGATGATGCATCGAGGGAAGATTTGGTGAAGAGAATTAGCATGAAGCTACATGAGGCTTCAGTCAAAGATTTATTGATTCTTGCACAATCTCCTCAAATTACAAGATATGATGTTGACTTGGTTCATAGGATTGTGAATCAGTATTTTGTTCATCATAAGTTCAACCGAGATTCAGACGATATCGAGAGGAGCGAGAAAGGAGCTGATAATCTTTTACTGGGGCATGGATCCTCATTGAATGTAGCTAAATTGATTGACGAGTATCTTGCTGAAATTGCAGATGACCCGAATCTCTTACTCACTAGGTTCATCGACTTGTCACAGTCAATTCCTGAATTTGCAAGGCCAATACATGATAGATTATATAAAGCAATCGACATTTATCTTAAGGTTCACCCAAATTTGACAAAAGCTGATAAGAGGAAGATATGTGGTCTGATTGATGTCAAGAAACTTACAACGGAGGCGTCGATGCATGCAGCGCAGAATGAACGGCTCCCACTTAGAGTTGTCGTTCAAGTTCTCTTCTTTGAGCAGGTTAGAGTCTCAGCTGGTGTCGAAGCACAAAACAACAACTCTCGAGACTCGTCGAGTGCAATGACGAGCATAGACGAAGAATGCCCGAAGGAGTTGGACAACAGCAAGTCCCTAAAACACAATGTGGGGCACATGACGATAAATGAAGACATTCAGAAAACTCAGTTGGCTAAGAAGAGCAGCAAGAACAGTAGAAGTGGAATGAAGCTGTTGCCTTCAAGGTCGAGGAGGATTTTCGATAAGTTATGGATCATGGGTAAAGGTCACGGGGAAGGTCGGAGTCCCGAAACGTCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCTGTGCATATGAAGTCTTCTGGTACGTATACAAGACAGAGGCGGCACTCAATATCTTAG 1842 42.45 MKFMKLGSKPDAFLADGKTTRYVSSELPTDVTIFVGEVKFRVHKFPLLSKSNCLQKLVSKANEENSEEIHLIDFPGGPKAFEICAKFCYGITVTLNAYNVVAARCAAEFLEMTEDIEKGNLVFKIEVFLNSSIFRSWKDSIIVLQTSKSLLPWSEDLNIVGRCIDSIASKTSVDPANITWSYTYNRKLAEVDRIVDDGMKGQKKIDCVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRTTGCSCSFLLKLMKVAILVGADDASREDLVKRISMKLHEASVKDLLILAQSPQITRYDVDLVHRIVNQYFVHHKFNRDSDDIERSEKGADNLLLGHGSSLNVAKLIDEYLAEIADDPNLLLTRFIDLSQSIPEFARPIHDRLYKAIDIYLKVHPNLTKADKRKICGLIDVKKLTTEASMHAAQNERLPLRVVVQVLFFEQVRVSAGVEAQNNNSRDSSSAMTSIDEECPKELDNSKSLKHNVGHMTINEDIQKTQLAKKSSKNSRSGMKLLPSRSRRIFDKLWIMGKGHGEGRSPETSGSSQSPTSVVPVHMKSSGTYTRQRRHSIS 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1625474 1630393 + Carg09365-RA Car05g00294 148680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00294 613 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Car05g00294 613 MobiDBLite consensus disorder prediction 495 514 - -
Car05g00294 613 Pfam NPH3 family 211 464 IPR027356 -
Car05g00294 613 MobiDBLite consensus disorder prediction 533 557 - -
Car05g00294 613 Pfam BTB/POZ domain 26 116 IPR000210 GO:0005515
Car05g00294 613 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Car05g00294 613 MobiDBLite consensus disorder prediction 533 556 - -
Car05g00294 613 MobiDBLite consensus disorder prediction 572 613 - -
Car05g00294 613 MobiDBLite consensus disorder prediction 495 510 - -
Car05g00294 613 MobiDBLite consensus disorder prediction 580 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00294 - - - cpep:111805726 1201.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00294 Car12g00348 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00833 Car-Chr3:6766988 Car05g00294 Car-Chr5:1625474 0 dispersed
Car04g00423 Car-Chr4:2419274 Car05g00294 Car-Chr5:1625474 3.49E-94 dispersed
Car04g01796 Car-Chr4:10297825 Car05g00294 Car-Chr5:1625474 1.16E-149 dispersed
Car05g00294 Car-Chr5:1625474 Car16g00291 Car-Chr16:1802904 4.91E-173 dispersed
Car12g00348 Car-Chr12:2209917 Car05g00294 Car-Chr5:1625474 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00294 Car_Chr05 FPKM 38.955902 40.590721 57.302822 57.898983 28.166134 25.793499 29.726429 25.56839 22.474787 20.749676