Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00295 ATGTCGGACGAAGAGCATCAATTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAAACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGTTACCTTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACGTCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATATTCACCACCAAAAAACTTGAAGATATTGTTCCATCTTCCCACAACTGTGATGTTCCGGAGGTTACTCGTACTGATTATCAGCTTATCGACATCTCTGAAGATGGATTTGTGAGCCTCTTGACTGACAACGGAAGCACAAAGGATGATTTGAGGCTTCCTACGGATGATAGTTTACTTACTCAGATTAAAGATGGGTTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAGTTAA 483 46.17 MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1630760 1632984 - Carg09364-RA Car05g00295 148681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00295 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car05g00295 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car05g00295 160 CDD S1_eIF5A 86 156 - -
Car05g00295 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car05g00295 160 MobiDBLite consensus disorder prediction 1 21 - -
Car05g00295 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car05g00295 160 Gene3D - 86 159 IPR012340 -
Car05g00295 160 Gene3D - 1 85 IPR014722 -
Car05g00295 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car05g00295 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Car05g00295 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car05g00295 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Car05g00295 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00295 Car09g00361 CCT
Car01g01279 Car05g00295 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00295 Car-Chr5:1630760 Car18g01034 Car-Chr18:10675800 4.30E-104 dispersed
Car01g01279 Car-Chr1:11589971 Car05g00295 Car-Chr5:1630760 1.18E-109 wgd
Car10g00432 Car-Chr10:2154764 Car05g00295 Car-Chr5:1630760 7.60E-59 wgd
Car05g00295 Car-Chr5:1630760 Car09g00361 Car-Chr9:1964282 1.18E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00295 K03263 K02180 csv:101211156 315.079