Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00302 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGGCATTGGGGCTCATGGGTGTCCGAGATTCGTCACCCTTTACTGAAAACCAGAATTTGGCTGGGCACGTTCGAAACGGCTGAGGACGCTGCCAGAGCCTACGATGAAGCTGCTCGCCTAATGTGCGGTCCTCGTGCCAGAACCAATTTCCCTTTCAACGCAAATGACTCCAATTCCTCTTCTTCTAAGCTCCTCTCTGCTAATTTGACCGCCAAACTCCACCGCTGCTACATGGCCTCGCTTCATTTGACCAACCCATTGCCGCAGAAACCAGCCGAGAAGAAAAGGGCCGTGAAAATGACACAAATGGAGACTGCCCATCAGCCGTTTGTGGCTCTGGAAGAAGACCACATTGAACAGATGATCGAGGAGTTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTCTGCCACCGCCGCCGCCGCCGCCTCAGCCGTTTTGA 483 53.42 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSANLTAKLHRCYMASLHLTNPLPQKPAEKKRAVKMTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVLPPPPPPPQPF 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1680751 1681361 - Carg09357-RA Car05g00302 148688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00302 160 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Car05g00302 160 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01251 Car-Chr4:7250674 Car05g00302 Car-Chr5:1680751 1.21E-61 dispersed
Car05g00302 Car-Chr5:1680751 Car08g00507 Car-Chr8:3192328 4.43E-54 dispersed
Car05g00302 Car-Chr5:1680751 Car05g00303 Car-Chr5:1684311 5.91E-61 tandem
Car12g00340 Car-Chr12:2145444 Car05g00302 Car-Chr5:1680751 8.65E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3540 PF00847 AP2 5.80E-12 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00302 - - cpep:111805765 274.633