Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00310 ATGGCTTTTCGCAACCAACTCTCTCAGGACCTTCCTCTTCATTATGAGAACCAGTCTCAACCGGAACGGCCGCTTTCTGATAACACGCTGCGCTCGATTTTGTCTGATCAACTGACTGACCACTCTCCGGCCGACGATGGTTCTAAGCCTGAACATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAGCACCTCATTCTCACTTTTCTGATGAGACCTCGGCGACGGCTGCGGATAACGTTGACACCGACTTCCTTAATCTTCACACGACTGCTGCCAATTCTGCTGTCTCTCACTCGTCGGGTCAATGGCTCTCCCGCGCGATCCTCCATCGCGATCATAGCGATGTTTTAGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACCACTTTGTCGCGCGAATCGGATGATTTGAAGAATAACAGCAGCGGCGGGGGTGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCGTATGGTGGAGATGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCGGAAATTCTGGCGCATCCTCTTTACGAGCAGCTACTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTGGACCAGTTGCCGAGAGTAGATTCTCAGCTTGCTCGGTCTCAGAATGTGGCAGCGAAATACTCGTCGTTTGGTCACCGTTCTCAGCCCATAGCCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACTGGTGCTACAATGTCTGATGATGACGAAGACCAGACAGATAGCGATGCTAATTTGTTTGATGGAAGTTTTGAGGGTCATGATGCTATGGGATTTGGTCCTCTTATCCCAACAGATAGTGAGAGATCCCTTATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAAGAGAAAATTTTAGATATCAGGGAGGAGATTTTGCGAAAAAGAAGAGCAGGTAAGCTTCCCGGCGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAATTGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAAGAAACTGGGCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACGAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGGTATAGCTACTGA 1368 48.46 MAFRNQLSQDLPLHYENQSQPERPLSDNTLRSILSDQLTDHSPADDGSKPEHPLQSTPNWLNSALLRNQAPHSHFSDETSATAADNVDTDFLNLHTTAANSAVSHSSGQWLSRAILHRDHSDVLDEVADAADAMIGATTLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNEGAYGGDAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDSQLARSQNVAAKYSSFGHRSQPIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQTDSDANLFDGSFEGHDAMGFGPLIPTDSERSLMERVRHELKHELKNGYKEKILDIREEILRKRRAGKLPGDTTSVLKAWWQSHSNWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRYSY 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1707821 1711343 + Carg09349-RA Car05g00310 148696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00310 455 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Car05g00310 455 MobiDBLite consensus disorder prediction 435 455 - -
Car05g00310 455 Pfam KNOX1 domain 190 229 IPR005540 GO:0003677|GO:0005634
Car05g00310 455 MobiDBLite consensus disorder prediction 142 158 - -
Car05g00310 455 Pfam KNOX2 domain 248 297 IPR005541 GO:0003677|GO:0005634
Car05g00310 455 MobiDBLite consensus disorder prediction 1 26 - -
Car05g00310 455 MobiDBLite consensus disorder prediction 297 318 - -
Car05g00310 455 MobiDBLite consensus disorder prediction 142 172 - -
Car05g00310 455 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Car05g00310 455 MobiDBLite consensus disorder prediction 38 58 - -
Car05g00310 455 ProSiteProfiles ELK domain profile. 355 375 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01251 Car-Chr2:8444055 Car05g00310 Car-Chr5:1707821 7.24E-46 dispersed
Car04g01255 Car-Chr4:7284554 Car05g00310 Car-Chr5:1707821 2.73E-147 dispersed
Car05g00310 Car-Chr5:1707821 Car15g01077 Car-Chr15:8459115 1.08E-109 dispersed
Car12g00335 Car-Chr12:2114504 Car05g00310 Car-Chr5:1707821 0 wgd
Car05g00310 Car-Chr5:1707821 Car09g00379 Car-Chr9:2088126 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3542 PF03791 KNOX2 3.00E-19 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00310 - - csv:101213817 746.888