Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00319 ATGGAGATTTTTCACCTGCCGACTACACCACCACTCCTCACTTCGATCGCCGCCGCCTCGATTCTCCTTTTTCTTCTCCTCTCCGACAATTACTCCGACCGATTCGCAACCAAATCTCCGCCTCCACTAAAATCCACGCACCTCCACCAATTTCCTCCGATTTCCGATCGATTCCGAGCCGTTCACTTGCCGGAAATCTCCGAGGAGTTGCTCGCTCATCGCCTTAATCTAAGAAAAGCGATGGAAACGAGATTGACCAGAGACGAAAAGCTCGAACTAGGGCTCGCTCGGGCTAGGGCGGAAATTCGCCGAGCGGCGAAGGTCTCAAACTTATCGACCACCGTCGATTACGTTCCTTCTTTCGCAGTTTATCACAATCCCCGCGCTTTTTTTCAGAGCTACGTGGAGATGGAGAGAAGATTCAAAGTGTACGTGTACCCGGAGGGGGATTTGCCTTTAACCCACGACGGGCCGTGTAAGAACATATACACAGTGGAAGGGAGGTTCATACATGAGATGGAGCATGGGGCGAATGGGTTCAGGACGGCGGATCCGAGTGGGGCTCATGTTTTTTTTATGCCGTTCAGCGTGGCTTGGATGGTTAAGTACTTGTATGAATATGGAAGCTTTGATCAAACGCCGCTGCGGGTGTTTGTGAAAGGAAACCCCTTCCTCTACAACACATCCATCCGCGTCCTCTGTAACGCCAACTCCTCCGAAGGATTCAACCCACAAAAAGACGTCAGCTTACCGGAGATCCACCTCTACGACGGCGACATATCACCGAAGCTACTGTCGCCGCCAGACACCCAACGTCCCCACCTAGCATTCTTCGCAGGCGGTAACCACGGTCCAATAAGACCCATAATCCTAAAGCACTGGAAAGACCGCGACAGCGACATCCGCGTGTACGAGTATCTCCCAAAGGGGCTGGACTATTACGAGCTAATGCTAAAGTCAAGATTTTGCCTGTGCCCAAGTGGGTACGAAGTGGCAAGTCCCAGAATCGTGGAGGCAATTTATGCTGAATGTGTGCCGGTGATTATTTCGGAGAAGTACGTTTTGCCGTTCAGCGACGTGTTGAGATGGGAAGGCTTTTCGATTAATGTGGGCGTGTCGGAGATTCCGAGGTTGAAGGAGATTTTGATGGGGGTGTCGGAGGCAGAGTACGAGAGGCTTAAGGAGGGCTTGAGGATTGTTCGAAAGCACTTTGTGTTGAACCGTCCGGCTAAGAGGTTCGATGCTTTTCATATGATTTTGCATTCGATTTGGCTTAGGAGATTGAATGTAAGACTTGCGTAG 1302 50.92 MEIFHLPTTPPLLTSIAAASILLFLLLSDNYSDRFATKSPPPLKSTHLHQFPPISDRFRAVHLPEISEELLAHRLNLRKAMETRLTRDEKLELGLARARAEIRRAAKVSNLSTTVDYVPSFAVYHNPRAFFQSYVEMERRFKVYVYPEGDLPLTHDGPCKNIYTVEGRFIHEMEHGANGFRTADPSGAHVFFMPFSVAWMVKYLYEYGSFDQTPLRVFVKGNPFLYNTSIRVLCNANSSEGFNPQKDVSLPEIHLYDGDISPKLLSPPDTQRPHLAFFAGGNHGPIRPIILKHWKDRDSDIRVYEYLPKGLDYYELMLKSRFCLCPSGYEVASPRIVEAIYAECVPVIISEKYVLPFSDVLRWEGFSINVGVSEIPRLKEILMGVSEAEYERLKEGLRIVRKHFVLNRPAKRFDAFHMILHSIWLRRLNVRLA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1740232 1743613 + Carg09340-RA Car05g00319 148705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00319 433 Coils Coil 425 433 - -
Car05g00319 433 Pfam Exostosin family 227 383 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00319 - - - cmax:111491802 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00319 Car-Chr5:1740232 Car07g00852 Car-Chr7:4518689 1.33E-131 dispersed
Car10g00480 Car-Chr10:2409415 Car05g00319 Car-Chr5:1740232 4.69E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g503 Blo01g01393 . . . . Bpe02g00556 . . Cmo05g00377 . . Cma05g00375 . . Sed01g1382 . . Bhi04g00016 Tan02g2733 Cmetu03g0444 . Hepe10g0241 . Lcy13g1800 . . . . . . . Cone4ag1775 Cone7ag1691 . . . . . Cme03g01604 . . . . . . . . . . . . . . Car05g00319 Cpe11g00321 . . . . . . . . Cla08g01344 Cam08g1807 Cec08g1386 Cco08g1515 Clacu08g1500 . Cre08g1287 Lsi08g01216 . Chy03g01109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012011 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00319 Car_Chr05 FPKM 37.83308 39.220627 36.486507 29.258892 31.639544 31.900547 31.365667 82.968033 83.52388 79.010651