Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00324 ATGGCGAAAATGAAGAAATTCCAGGTCAAATTGGGAGATTTGAAGCTCCATGGGTTCGGTAATGAAAAGGAAGCAATCGCCATTGAAATCAAATGGAAAGGTCCCCACAGACATTCCATTTTATCCGTTCCTTTCTACGGAAAATCCCCACTCCAAACCGACCGCACCACCGCCCAACGAGCCCTTATCCAAACCCAACAAACCCTCCAATGGGATCACGAATTCCTCAGCATTTGTGAATTCGAGTTCGCCGATGACTCTTCTTCCATTGCCTCCTGGGACACCAAATTCTACGTCTTACTCGAAGAATCCACAAAATCCAAGACGAAATTCTCTGTTTTAGGGAAGGCGTCGTTGAATTTAGCGGAAATGCTTTTGGAAATGGAGACCATAGTGGAGCGAAATGTTCCGATTACGTTGAAGGGTGCTTCACATCAAGCTACGCTTTCTGTGCGTGTGAATTTTGTGGAGGTCAGGGATGATTCGGACCCGATTCAACAGCAACAGGACAAGGAGGGCTTTTTGAAAGCGTTGAAAGATCTAACCAGCTTCAGGAAGAAGAACAGAGACAAGGGTAAAGCGGTTTCATCGGACGGTCAAAACAGAGGTTTGGCGGATCCAAAGGAGGAAGATGGAGGCGATCAAAAGCAGCTGGGGAAATTGTTGTCCAAGAAGAGGCGGCTGAGTTTCAGCTTTAGATATTCTAAGGGGAAAGTGGAGCCGTGGTCGGAGAAGACCAACACGGCGGTCAACGACGGAGTTTCCGTTGACCGACAGCAACACGACACCGAGCCCACCGCCCCCATTTCAACCACTTCTCAAACGGAGAAAGGAGAAAGCACAGAGATTTCTTTGGAAATTGATGAACAAAACAAAGAAGACAGCAGAGGGAGGTGGGAAACTAAAGAAATAGTTAGTAGAGATGGCAAGGCAAAGCTGAAGACGGAGGTGTTCTTTGGCTCGTTTGACCAGCGGAGTGAGAAGGCGGGTGGTGAGAGCGCCTGCACGGCGATAGTCGCCGTGATCACCCACTGGCTGCACTCGAATTACGGTGCGATGCCAACACGACCGGAGCTCGACAACCTCATAATGGAAGGTTCATCAGAATGGCAAAAGCTTTGCAATAACCACTGTTACTCAAACTCCTTTCCCAACAAGCATTTCGACCTCGAGACCGTTATGGAAGCCGATGTCCGACCGATCACTGTTTCAGCTGAAAATTCATTCGTGGGGTTCTTCAGCCCGGAGAAATTCAACTGCTTGTCGGAAGCAATGTCGTTCGAGCAAATATGGAATGAGGTCAATACTACCAAAACTTGTCCAAATTATGAAACGAGAGTTTACATCGTGAGTTGGAACGATCATTTCTTCGTGTTGAAGATGGAAGAGAATGCTTGTTACATTGTTGATTCGCTAGGGGAACGACTGTTCGAGGGGTGTAATCAAGCCTACATCTTGAAGTTCGATAGCTCGAGTTTGATGTACGAGAGCAAAGAGAAAGGAGAGGTCGGGGAATTGGTTTGCAAGGGAAAAGAGTGCTGCAGAGAGTTTTTTGAAAGGTTTCTTGCGGCCATAACCATTGAAGAGCTGGAAGAAGAGCAGAAGAAGCAGAGTAGCTGTAATTTTATACCCCATCAGAGGCTGCAGATTGACTTCCATTTTAGTAGCCCTGTTGTTTCATCCTTGTCAACTTCCCCTTGCTCTATTTTCTCTGATCAAGACTTTGTATCATAA 1734 46.83 MAKMKKFQVKLGDLKLHGFGNEKEAIAIEIKWKGPHRHSILSVPFYGKSPLQTDRTTAQRALIQTQQTLQWDHEFLSICEFEFADDSSSIASWDTKFYVLLEESTKSKTKFSVLGKASLNLAEMLLEMETIVERNVPITLKGASHQATLSVRVNFVEVRDDSDPIQQQQDKEGFLKALKDLTSFRKKNRDKGKAVSSDGQNRGLADPKEEDGGDQKQLGKLLSKKRRLSFSFRYSKGKVEPWSEKTNTAVNDGVSVDRQQHDTEPTAPISTTSQTEKGESTEISLEIDEQNKEDSRGRWETKEIVSRDGKAKLKTEVFFGSFDQRSEKAGGESACTAIVAVITHWLHSNYGAMPTRPELDNLIMEGSSEWQKLCNNHCYSNSFPNKHFDLETVMEADVRPITVSAENSFVGFFSPEKFNCLSEAMSFEQIWNEVNTTKTCPNYETRVYIVSWNDHFFVLKMEENACYIVDSLGERLFEGCNQAYILKFDSSSLMYESKEKGEVGELVCKGKECCREFFERFLAAITIEELEEEQKKQSSCNFIPHQRLQIDFHFSSPVVSSLSTSPCSIFSDQDFVS 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1760411 1762648 - Carg09335-RA Car05g00324 148710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00324 577 MobiDBLite consensus disorder prediction 243 280 - -
Car05g00324 577 MobiDBLite consensus disorder prediction 187 220 - -
Car05g00324 577 MobiDBLite consensus disorder prediction 203 220 - -
Car05g00324 577 MobiDBLite consensus disorder prediction 281 300 - -
Car05g00324 577 MobiDBLite consensus disorder prediction 243 300 - -
Car05g00324 577 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 27 163 IPR019448 -
Car05g00324 577 ProSiteProfiles C2 NT-type domain profile. 1 157 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00324 - - - csv:101207652 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00324 Car-Chr5:1760411 Car14g00342 Car-Chr14:1662746 7.35E-10 dispersed
Car05g00324 Car-Chr5:1760411 Car06g00475 Car-Chr6:2623808 1.55E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g486 . . . . . . . . Cmo05g00382 . . Cma05g00381 . . Sed03g1613 . . Bhi04g00946 Tan02g2726 Cmetu03g0210 . Hepe10g0247 . Lcy13g1793 . . . . . . . . . . . . . . Cme03g01613 Blo17g00020 . . Bda13g01261 . . . . . . . . . . Car05g00324 Cpe11g00326 . . . . . . . . Cla08g01337 Cam08g1799 Cec08g1378 Cco08g1506 Clacu08g1493 . Cre08g1280 Lsi08g01208 . Chy03g01117 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013221 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00324 Car_Chr05 FPKM 81.592232 89.402596 160.951187 151.387192 58.109295 73.825645 59.26804 204.693604 212.521759 192.095535