Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00326 ATGGGATCGGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCATTGGAGGATTTGACAGTGATGTTAAAGCACAAGATCTTATGAGTTATCTTGAATCTGAAATTGGGCTTGTGGACAGGTGTAGATTAAAAACTTCATGGACTCCTCCAGAATCGTACCCAGATTTTGACATCGTTAATGTCGCCGATGTAATAAAATCTGATGATTATAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGCATTACCTGACTCAGCTGCTGGGGCTCTACATGCCGCGGGGCGTAATGAGCTATTTTTGAACGATAGATTGTTGAAGGTGAGTTTGGGGCCTGAGAGTCCATACCATGTAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTAATGTGCTTGTAGATATAGGGAACTTAACTTGTCAAGATGGGTTTTCGGTTGCTTGGAGAGGACCTTCCAGTGGAATGGATTTTCTGGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAGGGATACCGCGTTCTCTTTTAAAGATAACAACAAGCATACAGTGTTAAAGTGTGATTACAAGGTGGAGTTCTTGGTGAGGGACATTAATCAGATCAAAAGATATACAGATATATCATGTTATGTTATTCTCTTGCAACTTACTTCGTCGCCCTGCATTTGGTATAGAACTGCAGATGATGATATCGCCAAATCAGTTCCGTATGATTTGTTGGACGACGATGATCCATGGATCCGGACAACAGATTTCACGATAAGTGGGGCTATTGGCCGTTGTAATACGTACAGAGTTTCAGTTCCACCCCGATATGGTATCAAGCTGAATAATGCCATGAATTATTTAAAAGAACAAAGAGTGCACCAGGTGTCCCTCAAACGGCCTCCCAAGATCCTGAATGAACCAGATTATGGGGTGCAAATGACTGATCACTTCTTTTGCATCCATTACAAAGAAGACATACCCTTTGAACTGTTATTTCTAGTAAATGCAGTAATGCACAAAGGGATAATCAACCAGCACCAAATGACTGATAGATTCTTTGATCTGCTAAGAAACCAGCCCAATGAAGTTAGTTTGGCTGCTTTAACTCATATTCATACGTATAGACATCCTGTACCGGACGCCTGTAAGAGGCTAAAACTTGTACAAGAATGGCTGTTGAAGAACCCTAGGCTTTGGAAAAGATCTAAAGAGCTGGTTGATATCATTGAAATCAGGAGATTAGTAATAACTCCATCAAAAGCATACTGTTTTCCACCTGAAGTTGAACTCTCCAATAGGGTTTTGAGAAGGTTCAAGGATGTTGCTGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCTCCTATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACTAAAATATTTGGGAGGATGAAACATATTCTGAAACATGGATTTTACTTGTGTGGTCGGAAATACTCCTTTTTGGCTTACTCGTCCAACCAACTGAGAGACCAATCAGCTTGGTTCTTTTCTGAATGCAAAGATGTTACTGTTGATAGTATTTTACGTTGGATGGGGAGATTTACGAACAAAAATGTTGCGAAGTGTGCTGCTAGAATTGGTCAGTGTTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACCAACTTCCTGATGTTGAGAGGAATGACTATATTTTCTCTGATGGGATTGGTACCATTACTCCTGATCTAGCGCAGGAAGTTGCAGACAAATTAAAATTGGGTGGGAGCCCACCCTGTGCTTACCAAATTAGATATGCAGGTTGCAAAGGTGTTGTTGCCTCTTGGCCATCCAAGGGTGACGGGATCAGACTTGCTTTAAGACCAAGCATGAACAAATTTCAATCAGATCATAGAATCTTGGAGATTTGTTCATGGACTAGATTTCAACCAGGTTTTCTTAATAGACAGATTATAACCCTTCTTTCTACACTAAATGTTCCTGATGAAAATTTCTGGAGTATGCAGGAGACTATGGTTTCAAAACTGGATAGAATGATCACTGATACAGATGTGGCGTTTGATGTTCTCACGGCATCCTGTGCCGAGCAAGGAAATGCAGCAGCAATTATGTTGAGTGCTGGTTTTGAACCTCAAACTGAACCTCATCTAAGGGGCATGTTAATGTGTATAAGAGCAGCGCAGCTCTGGGGCCTTCGGGAAAAAGCTAGGATCTTTGTTACTGATGGGAGGTGGTGTATGGGGTGCTTCGACGAGAGCGCCGTGCTACAAGAAGGCCAATGCTTCATTCAAGTATCCACTCCACTGCTTGAGAGGTGTTTCTCCAAGCATGGGTCTCTCTTTGATGAGACAAAGAACAATCTTACTGTGATAAGAGGGACTGTAGTCATAGCCAAAAATCCATGCCTTCATCCTGGAGACGTGAGAATTCTTGAAGCAGTTGATGCTCCTGAGTTGCATCATTTATACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACAAACGAAGCTTCTGGAAGTGATTTGGATGGGGATCTCTACTTTATTACTTGGGATGAAAATCTCATTCCACCTAGTAGAAAAAGTTGGCCACCTATGGACTATGTTGCAGCAGAAGTAAAGACTCTTACACGCGAAGTTACGCGATTGGATATAATGGAGTTCTTCGCCAAAAATATGATTAATGAGAGTCTTGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGTGAGTATGGAGCTTTGGATGAGAACTGCATTAAATTATCTGAATTAGCTGCCACAGCAGTTGATTTCCCTAAAACAGGGAAGATTGTGACCATGCCTCCCCATTTAAAACCGAAACTGTATCCAGATTTTATGGGAAAACAAGCTACTCAATCATACAAGTCTACCAAAATTCTGGGAAGAATGTATCGCCGAATTAGAGATGTATACGATGAAGATATGATCACGGCATGCGAGCTAAATTTTACTCCTGGCGATGTCTATTACGACGTAGATCTTGAAGTTGCAGGAGCAGCAGATTTCATAGCAGAAGCATGGAATCAAAAGTGCTCATATGACGGTCAGCTGAGCGGTTTACTGGGACAATATAAAGTTAGTAGGGAAGAAGAGATTGTCACTGGGCATATTTGGTCCATGCCAAAGTACAGTAGCAGGAAGCAAGGAGAGCTGAAGGAGAAGCTCAAGCATTCTTATAGCACTCTTAAGAAAGAGTTCAGGCAAGTTTTTGAGAACATTGGCCCAGAGTTTGACCAACTCACTGACGATGAAAGGAATGCATTGTATGAAAGAAAGGCATCTGCTTGGTATCAGGTGGCATACCATCCAACTTGGTTGAAGAAATCAATGGAGCTACGAGAACCCGACATTTCCGAGGCCACCCCAATGTTAAGCTTTCCTTGGATTGCTGCTGATTATCTTGCACGGATCAAGATCAAATGCCGGAAGATGAAAAGCTTCGACCCAACAAAGCCGATTAACTCATTGGCGAGCTATCTTTCCGATCGGATGGAAAAAGTAAGGATCCTTTTCTCTTTAAACTCTGCTGCAAGAGATAAATGCCGCGCCTGCTTCATGGGACGCTTCAAGCCGATATATATGGAATCGACAAGCTTCGAACTGGATGTCCTGTTTTCTGCGGGAAGGGTAAGTCTATTTCATTGTGAGATTACTGGAAAAAGCCAGTTTTATTTACCATATTGTTCATCTTCTTCTCATGTAAAAAAAAAGTCAGCCAAAAAGTTTCTTGCTGGAGTGAAGAGATGCCTTCTTTGCCGTCCCGAGATTGTTGGCTCTCAAATGTACGCAACACTCGATCTTGATAAGGCCCGAGTTGGCCGAACGAGAATCGTGGATCAGCCATACAGTCCTCAATGGAACGATCATTTTCGTATATACTGTGCTCATACACTGTCACATGTTATATTCACAATAAAAGATGGAGGTGTAGTTGGTGCAACATTACTTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATATGTATATGAGAGATGGGTTGAAATATTAGATGAAGACCGCAAGCCATTATATGGTCGTCCTAAAATCCATACAGGAGCTGGTCCCAAGGAATCCGAGATCCGAAGTTCGGTGGTGTGCCCGTTCACATTCTTCAAGCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAAGATGCTCATGTTTTAAACAACTTCCTCCCTCGAGTTGGGTTGTCAAGAGGGAACTTTCATGAAGTTCATAGGTGTTGGGAGGACATTTTCGATGCAATTAGCAATGCGAAACACTTGATTTATCTAACTGGTTGGTCTGTGTATACTGAAATAACATTGATAAGAGACAGAGAAAGAAGACAAACAGGAGAGGATATTACTCTTGGGGAGCTGCTGAAGAAGAAAGCAGAGGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCCATTGAAGAGTTCAAACGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAGTATTTCAGGGGCTCGAAGGTTCGATGCGTTCTGTGCCCACGGTATCCTGATGTTGGTAGAACCATAATTCAGGGGTTTGAGACAGCAACCACGTTTACTCACCACCAAAAAACATTGGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGGGAAAAGAAGGATCGTGAGCTTTGTTGGTGGTCTTGATCTATGTGATGGGAGATATGATACACCAAAACACCCTTTGTTTTCAACTCTAGATTCAATCCACTATAAAGATTTTCACCAGCCTAACTTTTCAGGCTCTTCGATAAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCCGCCTGGAAGGGCCAGTTGCTTGGGATGTTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTTGGAAATAACTCGTTGATTCCAATGCAAAAGTTTGAAGAAATCATTACTCGTCCCGTAATGGTATTACCATCAGACGACCCCGACACATGGAATGTTCAAATCTTTCGATCTATCGACGGTGGTGCTGTTGAGGGCTTTCCAGAGATACCTGAAGATGCTTCTAAACTAGGCCTTGTAAGTGGGAAGGATAGTGTTTTAGATAGGAGTATTCAAGATGCTTATATTAACGCCATTCGCCGAGCTAAAAATTTCATATACATTGAGAATCAGTATTTCATTGGAAGCTCTTATGGGTGGAAATCAAATGGTGTGAGGGTAGAAAGCATCAATGCTTTGCATCTTATTCCAAAGGAGATTTCATTGAAGATTGTAAGCAAGATTGAAGCTGGAGAGAGGTTTACAGCATATATTGTGATTCCAATGTGGCCGGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTAGACATGATGTACACTGATATAACTCAAGCTCTTCGGAAGAAGGGTCTCGACGCAAATCCTAGAGATTACCTGACGTTCTTCTGCCTTGGCAATCGAGAGAAAAAGAGAACTGGAGAATATATTCCACCGGAGAAACCAGAACCGAACTCGGATTACGCTCGTGCTCAAGAGTTTCGACGTTTTATGATCTATGTTCATTCTAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCAAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATAGCCATGGGGGCTTTTCAGCCGCATCACTTGGCATCTAGTGAGCCTGCAAGAGGTCAAATCTATGGCTTCCGAGTGGCTCTCTGGTACGAACATCTTGGTCTGTTTGACAAAGTCTTCCATAACCCGGAGAGTGAAGACTGCGTCCAATTCGTAAACAAGCTCGCCTTAGAAAACTGGCAATTTTACTCGGACGATACCTTTGATGGCGATCTTCCTGGTCATCTTCTTTCCTACCCCATCGAAGTAGGCCCCAATGGGTCGATCTCGGCGCTTAAAAAATTTGAACTTTTCCCTGACACGAAGGCTCGTGTTCTTGGGCAATTGTCTGATTATCTACCTCCAAACCTGACCACTTGA 6126 42.28 MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIVNVADVIKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVNQRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFSFKDNNKHTVLKCDYKVEFLVRDINQIKRYTDISCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQVSLKRPPKILNEPDYGVQMTDHFFCIHYKEDIPFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQPNEVSLAALTHIHTYRHPVPDACKRLKLVQEWLLKNPRLWKRSKELVDIIEIRRLVITPSKAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGRFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHQLPDVERNDYIFSDGIGTITPDLAQEVADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTRFQPGFLNRQIITLLSTLNVPDENFWSMQETMVSKLDRMITDTDVAFDVLTASCAEQGNAAAIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQEGQCFIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMDYVAAEVKTLTREVTRLDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDVYDEDMITACELNFTPGDVYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRKQGELKEKLKHSYSTLKKEFRQVFENIGPEFDQLTDDERNALYERKASAWYQVAYHPTWLKKSMELREPDISEATPMLSFPWIAADYLARIKIKCRKMKSFDPTKPINSLASYLSDRMEKVRILFSLNSAARDKCRACFMGRFKPIYMESTSFELDVLFSAGRVSLFHCEITGKSQFYLPYCSSSSHVKKKSAKKFLAGVKRCLLCRPEIVGSQMYATLDLDKARVGRTRIVDQPYSPQWNDHFRIYCAHTLSHVIFTIKDGGVVGATLLGRAYVPVEDIIKGYVYERWVEILDEDRKPLYGRPKIHTGAGPKESEIRSSVVCPFTFFKQRWGCKVSLYQDAHVLNNFLPRVGLSRGNFHEVHRCWEDIFDAISNAKHLIYLTGWSVYTEITLIRDRERRQTGEDITLGELLKKKAEEGVTVLLLVWDDRTSIEEFKRDGLMATHDQETAEYFRGSKVRCVLCPRYPDVGRTIIQGFETATTFTHHQKTLVLDSEIAGGGTGKRRIVSFVGGLDLCDGRYDTPKHPLFSTLDSIHYKDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDVLYNFEQRWRKQVGNNSLIPMQKFEEIITRPVMVLPSDDPDTWNVQIFRSIDGGAVEGFPEIPEDASKLGLVSGKDSVLDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWKSNGVRVESINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDITQALRKKGLDANPRDYLTFFCLGNREKKRTGEYIPPEKPEPNSDYARAQEFRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASSEPARGQIYGFRVALWYEHLGLFDKVFHNPESEDCVQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSISALKKFELFPDTKARVLGQLSDYLPPNLTT 2041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1771728 1779633 - Carg09333-RA Car05g00326 148712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00326 2041 Pfam C2 domain 1291 1370 IPR000008 -
Car05g00326 2041 ProSiteProfiles C2 domain profile. 1249 1368 IPR000008 -
Car05g00326 2041 Pfam Phospholipase D C terminal 1959 2030 IPR024632 -
Car05g00326 2041 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1887 1914 IPR001736 GO:0003824
Car05g00326 2041 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 114 IPR000504 GO:0003723
Car05g00326 2041 Pfam Phospholipase D Active site motif 1560 1597 IPR001736 GO:0003824
Car05g00326 2041 Pfam Phospholipase D Active site motif 1888 1914 IPR001736 GO:0003824
Car05g00326 2041 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1559 1597 IPR001736 GO:0003824
Car05g00326 2041 Pfam RNA dependent RNA polymerase 417 999 IPR007855 GO:0003968
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00326 Car-Chr5:1771728 Car08g00568 Car-Chr8:3743854 0 dispersed
Car10g00129 Car-Chr10:607822 Car05g00326 Car-Chr5:1771728 8.86E-170 dispersed
Car15g00840 Car-Chr15:4862760 Car05g00326 Car-Chr5:1771728 2.61E-174 dispersed
Car05g00326 Car-Chr5:1771728 Car08g00824 Car-Chr8:5496173 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00326 K11699 - csv:101217108 2251.48