Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00327 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATTCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGCAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCACTAGTTCTGTGCCATACAAGGGAGCTTGCATACCAGATCTGTCATGAATTTGAGAGGTTCAGCACTTATCTTCCCGATCTAAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGACAAGGACCTATCTCTGAAGAACGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCCCTTGATATGCGGAGAGACGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTCTCTGCAACCCTCAGCAAAGAAATCCGCCCAGTTTGCAAAAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAGGCAAAGCTGACCTTGCATGGTCTTGTCCAGCATTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGCTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGAGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAAGAAGAGAGGTTGACTCGATACAAGGGCTTTAAAGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATTTGCACAGGGTCGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTCGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACATGCCATCATAG 1284 43.07 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1782422 1787579 + Carg09332-RA Car05g00327 148713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00327 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Car05g00327 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Car05g00327 427 SMART ultradead3 65 266 IPR014001 -
Car05g00327 427 Gene3D - 259 426 IPR027417 -
Car05g00327 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Car05g00327 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Car05g00327 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Car05g00327 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Car05g00327 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Car05g00327 427 MobiDBLite consensus disorder prediction 1 22 - -
Car05g00327 427 Gene3D - 42 258 IPR027417 -
Car05g00327 427 CDD SF2_C_DEAD 263 392 - -
Car05g00327 427 CDD DEADc_DDX39 45 252 - -
Car05g00327 427 MobiDBLite consensus disorder prediction 1 29 - -
Car05g00327 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Car05g00327 427 SMART helicmild6 302 383 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00327 Car12g00317 CCT
Car05g00327 Car12g00317 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00327 Car-Chr5:1782422 Car06g00924 Car-Chr6:7169298 1.96E-81 dispersed
Car12g00317 Car-Chr12:2038936 Car05g00327 Car-Chr5:1782422 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00327 K12812 - csv:101217346 835.484