Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00334 ATGGATTCACCAAAAACTGTTCCACTTACTTCCACGTTAATCACTGTTTCATCCACTGCGACTCTTCCCACTTCTTCGTCCGAATCTCCTTGGGATTCTTTTTCAAAATTCGTTGACAACATATTTTTAGTAGAGTCCAACCAGAGTGATTATGGAGTAGCCACGGGATTTATTGAGGATGAATCCCCACCTTTTGTATTTTCTTCTCCAGAGTTGAATGCGGAAACTATTGAATCAACGCTTTCGAAAAGGACTCCCAATTTTGAGTCATCTAACACTGCACAAATTGAAGCCTACTGTAATCCAGATCTTGTGGACGATATCTTGGCGGAGTTGCAAGAGGTTGCTGGGACAAGCATAATCCAAGCTTTTTGTAATAAAGATGAACAACCTGAAGTTTGTGAAGAGCAGTCATCTTTTGAATTCTGTAGTAACCAATTTGGTTTATCCACCTCACAGGCTTGTAAGGAACAGGGGAATGAAGATTTATGTGAACAGGATGGTAGTGCTATCTATCAGGATTACTCAGATTTTGTGCCTCGATCTTGTAATGAACAGTTATGCAATGCTACTTCACATGGAGCCTATGAATGCAATAGCAATGATGCATTTTGGAGAGCTTTTCAGGTTGGTCAACCCCTACACGGTATGCGTCAACGCTACCTTCAATCTAAAGAAGCCGCTGCCAGTGCTCCTCACAACAATTTGCCTTCAAATTATACAATCAATGCTGAGATGACAACACAATATCCATGCTTGGTTGAGGACACAGACCTCTCAGTTATGAACTTCGAAGCAACATTTAACAACAGAGTACCAGCAGCAGCCAATTCATCTCATTTGGTGCGGACACCACTACGTCCTGCATCTGTTGGCAACCCTCTCTTGCAAGCTCCCAAGCCTTCAGGTATAGGGTTGCACCCAAATAGCGTCATTTTGGAGCCCTGCAATGCTGTTGTAGGACGTACCAACAAGGCCATTTCATTACCAAATTCCTTCATTTTGGAGCCCTGCAATGCTGCTGCTGTCAAAGCCGAGACATCTGAAACTCCACATGACACAAGAGATTCTGACTTCAACCAATCCCCTATTCTTGAAAACATCAGTAAAGTTCTTCCCAGAAGGAAAAGGAAGAGAAGCTCAGTCAATAACAATGGCGATGATGCAAAACGTTGCAGCTGCACAAAATCAAAGTGCTTGAAACTGTATTGCGATTGTTTTGCTGCTGGGATGTATTGCTCCGAGTCTTGTTCTTGTCAAGGATGCTTTAACAATCCAAAAAATTTACGAACTGTTCTTGAGACGAGGCATCAAATTGAAACCAGAGATCCACTTGCATTTGCTCCAACGGTTATCGAGGACCGTAATGAGCTTCCAGTAAATAATGAGAACGGAAGCCTATCGACTCCACCCTTGGCTAGACATAAAAAAGGTTGCAAATGCATAAAGTCTATGTGCTCTAAACAATATTGCGAATGCTTTCAGGCTAATGTTGGATGCACAGAGAGATGTCGATGTAATGACTGTAGGAATGACCATGGCAAGAGAGAAGAGGTGGTGCCAACTGGAAAAGCTGATGTTGGAAGCGTGGAAGGCAGCTTGATCTATGAACATGATGCGACGGCATTAAGGAAAGACATCTCCCCTTCTGAGTTTTATAGTCAACAACTCAACTCCCCGCAAACACCATCGTTCCAATACTCAGGTTACGAAACGGATCCCCTAAAATCCTGGATCGTGCCCGGAATATGTCGCCCCTCACCCGAATTTGATACGGCGAGCTCGTCTACTCCAGATTGCTACGACAAGTTTGTAGAACAAAACACAGACATAATGGATGCAAATTCTTGCCAATGGCGGCCGCAGCAGCAGCAGCAGCAGATCAATTCAACGCCATTCATACCATCCAAGCCAAAGGGTTGTACAAGCATGTCACGTACCGACCAGCTACGCATTGGAAGTAGTTCACCCGACACGCCCCCAGTTCAGGAAGGCCAGAAGACGTCCATTAATGGAGGCTCTCCAGAAACAAATATGGCTTCTTTTCCCCCTCATTATGGTAACAACGAATATGAGGTTGGGATGAATAATTCTTTGGGGAGGATGGAGCGCCGTAGATATATAGTGAAGTCGATGCCTCCCTTCCCGCACCTCACCCCACGCGACAGATGA 2172 44.43 MDSPKTVPLTSTLITVSSTATLPTSSSESPWDSFSKFVDNIFLVESNQSDYGVATGFIEDESPPFVFSSPELNAETIESTLSKRTPNFESSNTAQIEAYCNPDLVDDILAELQEVAGTSIIQAFCNKDEQPEVCEEQSSFEFCSNQFGLSTSQACKEQGNEDLCEQDGSAIYQDYSDFVPRSCNEQLCNATSHGAYECNSNDAFWRAFQVGQPLHGMRQRYLQSKEAAASAPHNNLPSNYTINAEMTTQYPCLVEDTDLSVMNFEATFNNRVPAAANSSHLVRTPLRPASVGNPLLQAPKPSGIGLHPNSVILEPCNAVVGRTNKAISLPNSFILEPCNAAAVKAETSETPHDTRDSDFNQSPILENISKVLPRRKRKRSSVNNNGDDAKRCSCTKSKCLKLYCDCFAAGMYCSESCSCQGCFNNPKNLRTVLETRHQIETRDPLAFAPTVIEDRNELPVNNENGSLSTPPLARHKKGCKCIKSMCSKQYCECFQANVGCTERCRCNDCRNDHGKREEVVPTGKADVGSVEGSLIYEHDATALRKDISPSEFYSQQLNSPQTPSFQYSGYETDPLKSWIVPGICRPSPEFDTASSSTPDCYDKFVEQNTDIMDANSCQWRPQQQQQQINSTPFIPSKPKGCTSMSRTDQLRIGSSSPDTPPVQEGQKTSINGGSPETNMASFPPHYGNNEYEVGMNNSLGRMERRRYIVKSMPPFPHLTPRDR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1915958 1921224 + Carg09325-RA Car05g00334 148720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00334 723 MobiDBLite consensus disorder prediction 346 390 - -
Car05g00334 723 MobiDBLite consensus disorder prediction 621 684 - -
Car05g00334 723 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 476 512 IPR005172 -
Car05g00334 723 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 390 425 IPR005172 -
Car05g00334 723 ProSiteProfiles CRC domain profile. 388 514 IPR005172 -
Car05g00334 723 MobiDBLite consensus disorder prediction 621 686 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00334 Car-Chr5:1915958 Car08g01016 Car-Chr8:6950102 5.06E-07 dispersed
Car05g00334 Car-Chr5:1915958 Car17g00197 Car-Chr17:1181670 1.77E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3545 PF03638 TCR 3.90E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00334 K21776 - pvy:116113015 278.485