Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00334 ATGGATTCACCAAAAACTGTTCCACTTACTTCCACGTTAATCACTGTTTCATCCACTGCGACTCTTCCCACTTCTTCGTCCGAATCTCCTTGGGATTCTTTTTCAAAATTCGTTGACAACATATTTTTAGTAGAGTCCAACCAGAGTGATTATGGAGTAGCCACGGGATTTATTGAGGATGAATCCCCACCTTTTGTATTTTCTTCTCCAGAGTTGAATGCGGAAACTATTGAATCAACGCTTTCGAAAAGGACTCCCAATTTTGAGTCATCTAACACTGCACAAATTGAAGCCTACTGTAATCCAGATCTTGTGGACGATATCTTGGCGGAGTTGCAAGAGGTTGCTGGGACAAGCATAATCCAAGCTTTTTGTAATAAAGATGAACAACCTGAAGTTTGTGAAGAGCAGTCATCTTTTGAATTCTGTAGTAACCAATTTGGTTTATCCACCTCACAGGCTTGTAAGGAACAGGGGAATGAAGATTTATGTGAACAGGATGGTAGTGCTATCTATCAGGATTACTCAGATTTTGTGCCTCGATCTTGTAATGAACAGTTATGCAATGCTACTTCACATGGAGCCTATGAATGCAATAGCAATGATGCATTTTGGAGAGCTTTTCAGGTTGGTCAACCCCTACACGGTATGCGTCAACGCTACCTTCAATCTAAAGAAGCCGCTGCCAGTGCTCCTCACAACAATTTGCCTTCAAATTATACAATCAATGCTGAGATGACAACACAATATCCATGCTTGGTTGAGGACACAGACCTCTCAGTTATGAACTTCGAAGCAACATTTAACAACAGAGTACCAGCAGCAGCCAATTCATCTCATTTGGTGCGGACACCACTACGTCCTGCATCTGTTGGCAACCCTCTCTTGCAAGCTCCCAAGCCTTCAGGTATAGGGTTGCACCCAAATAGCGTCATTTTGGAGCCCTGCAATGCTGTTGTAGGACGTACCAACAAGGCCATTTCATTACCAAATTCCTTCATTTTGGAGCCCTGCAATGCTGCTGCTGTCAAAGCCGAGACATCTGAAACTCCACATGACACAAGAGATTCTGACTTCAACCAATCCCCTATTCTTGAAAACATCAGTAAAGTTCTTCCCAGAAGGAAAAGGAAGAGAAGCTCAGTCAATAACAATGGCGATGATGCAAAACGTTGCAGCTGCACAAAATCAAAGTGCTTGAAACTGTATTGCGATTGTTTTGCTGCTGGGATGTATTGCTCCGAGTCTTGTTCTTGTCAAGGATGCTTTAACAATCCAAAAAATTTACGAACTGTTCTTGAGACGAGGCATCAAATTGAAACCAGAGATCCACTTGCATTTGCTCCAACGGTTATCGAGGACCGTAATGAGCTTCCAGTAAATAATGAGAACGGAAGCCTATCGACTCCACCCTTGGCTAGACATAAAAAAGGTTGCAAATGCATAAAGTCTATGTGCTCTAAACAATATTGCGAATGCTTTCAGGCTAATGTTGGATGCACAGAGAGATGTCGATGTAATGACTGTAGGAATGACCATGGCAAGAGAGAAGAGGTGGTGCCAACTGGAAAAGCTGATGTTGGAAGCGTGGAAGGCAGCTTGATCTATGAACATGATGCGACGGCATTAAGGAAAGACATCTCCCCTTCTGAGTTTTATAGTCAACAACTCAACTCCCCGCAAACACCATCGTTCCAATACTCAGGTTACGAAACGGATCCCCTAAAATCCTGGATCGTGCCCGGAATATGTCGCCCCTCACCCGAATTTGATACGGCGAGCTCGTCTACTCCAGATTGCTACGACAAGTTTGTAGAACAAAACACAGACATAATGGATGCAAATTCTTGCCAATGGCGGCCGCAGCAGCAGCAGCAGCAGATCAATTCAACGCCATTCATACCATCCAAGCCAAAGGGTTGTACAAGCATGTCACGTACCGACCAGCTACGCATTGGAAGTAGTTCACCCGACACGCCCCCAGTTCAGGAAGGCCAGAAGACGTCCATTAATGGAGGCTCTCCAGAAACAAATATGGCTTCTTTTCCCCCTCATTATGGTAACAACGAATATGAGGTTGGGATGAATAATTCTTTGGGGAGGATGGAGCGCCGTAGATATATAGTGAAGTCGATGCCTCCCTTCCCGCACCTCACCCCACGCGACAGATGA 2172 44.43 MDSPKTVPLTSTLITVSSTATLPTSSSESPWDSFSKFVDNIFLVESNQSDYGVATGFIEDESPPFVFSSPELNAETIESTLSKRTPNFESSNTAQIEAYCNPDLVDDILAELQEVAGTSIIQAFCNKDEQPEVCEEQSSFEFCSNQFGLSTSQACKEQGNEDLCEQDGSAIYQDYSDFVPRSCNEQLCNATSHGAYECNSNDAFWRAFQVGQPLHGMRQRYLQSKEAAASAPHNNLPSNYTINAEMTTQYPCLVEDTDLSVMNFEATFNNRVPAAANSSHLVRTPLRPASVGNPLLQAPKPSGIGLHPNSVILEPCNAVVGRTNKAISLPNSFILEPCNAAAVKAETSETPHDTRDSDFNQSPILENISKVLPRRKRKRSSVNNNGDDAKRCSCTKSKCLKLYCDCFAAGMYCSESCSCQGCFNNPKNLRTVLETRHQIETRDPLAFAPTVIEDRNELPVNNENGSLSTPPLARHKKGCKCIKSMCSKQYCECFQANVGCTERCRCNDCRNDHGKREEVVPTGKADVGSVEGSLIYEHDATALRKDISPSEFYSQQLNSPQTPSFQYSGYETDPLKSWIVPGICRPSPEFDTASSSTPDCYDKFVEQNTDIMDANSCQWRPQQQQQQINSTPFIPSKPKGCTSMSRTDQLRIGSSSPDTPPVQEGQKTSINGGSPETNMASFPPHYGNNEYEVGMNNSLGRMERRRYIVKSMPPFPHLTPRDR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1915958 1921224 + Carg09325-RA Car05g00334 148720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00334 723 MobiDBLite consensus disorder prediction 346 390 - -
Car05g00334 723 MobiDBLite consensus disorder prediction 621 684 - -
Car05g00334 723 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 476 512 IPR005172 -
Car05g00334 723 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 390 425 IPR005172 -
Car05g00334 723 ProSiteProfiles CRC domain profile. 388 514 IPR005172 -
Car05g00334 723 MobiDBLite consensus disorder prediction 621 686 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00334 K21776 LIN54; protein lin-54 - pvy:116113015 278.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00334 Car-Chr5:1915958 Car08g01016 Car-Chr8:6950102 5.06E-07 dispersed
Car05g00334 Car-Chr5:1915958 Car17g00197 Car-Chr17:1181670 1.77E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car08g01016 . 14 284 CPP Transcription Factor Family AT3G22760 50.5 1.2e-62 238.0
Car05g00334 . 367 517 CPP Transcription Factor Family AT3G22760 52.0 4.1e-42 169.9
Car08g01016 . 14 283 CPP Transcription Factor Family AT3G22780 52.8 1.6e-71 268.1
Car05g00334 . 374 517 CPP Transcription Factor Family AT3G22780 52.8 4.2e-40 163.7
Car08g01016 . 14 284 CPP Transcription Factor Family AT4G14770 54.2 9.6e-71 265.4
Car05g01259 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.2 3.8e-137 485.7
Car12g01226 CCT,CST,ECH 90 487 CPP Transcription Factor Family AT2G20110 58.9 6.7e-126 448.4
Car11g00499 CCT,CST,ECH 89 538 CPP Transcription Factor Family AT2G20110 51.3 6.3e-116 415.2
Car10g00582 CCT,CST,ECH 6 424 CPP Transcription Factor Family AT2G20110 51.9 2.2e-108 390.2
Car08g01016 . 14 145 CPP Transcription Factor Family AT3G04850 59.1 2.0e-44 177.9
Car05g01259 CCT,CST,ECH 93 526 CPP Transcription Factor Family AT4G29000 61.8 1.7e-146 516.9
Car11g00499 CCT,CST,ECH 60 509 CPP Transcription Factor Family AT4G29000 56.2 3.1e-132 469.5
Car12g01226 CCT,CST,ECH 99 494 CPP Transcription Factor Family AT4G29000 57.3 6.5e-130 461.8
Car10g00582 CCT,CST,ECH 6 396 CPP Transcription Factor Family AT4G29000 58.5 1.4e-121 434.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3545 PF03638 TCR 3.90E-10 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00334 Car_Chr05 FPKM 14.95927 18.073027 30.779343 31.263792 27.705906 29.76313 27.328276 47.587067 46.15905 50.685001