Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00341 ATGAGCCTGATCGTCCCACTGCCATCAAACCTCCTCCCAGATCCGGCGAACCCGGAATGGATGAGCAAAGGCGACAACGCCTGGCAGATGACGGCGGCGACATTGGTGGGGCTGCAAAGCGTGCCAGGTCTGATAATCCTATACGGAGGGGCGGTGAAGAAGAAATGGGCCATAAACTCAGCCTTCATGGCGCTGTACGCCTTTGCGTGCGTGCTGGTGTGTTGGGTGGGGTGGGGGTACCGGCTGTCGTTTGGGGATAAGTTGCTGCCGTTTTGGGGGAAGCTGAATGTGGCGTTGGACCAGCAGTTTCTGCTGGAACAGGCGTTTAGTGGGAAGCTGCCGTCGGCGACAATGGTGTTCTTTCAATTCGTATTTGCGGCGATTACTCTGGTTTTGATTGCAGGGGCGCTGCTTGGGCGGATGAACTTCTACGCTTGGATGCTGTTCGTGCCGCTTTGGCTTACGTTTTCGTATACGTTTGTGGCGTTTAGTATTTGGAGTCCTAATGGGTTTTTCTTTAAAATGGGACTCATTGATTACTCTGGTGGCTACGTCATTCATTTGTCCTCTGGCGTTGCCGGCTTCACCGCTGCATATTGGGTTGGGCCACGGTTGTCCAAAGACAGAGAAAGCTTCCCTCCAAACAACATTCTTCTAATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGCTGGACCGGGTTCAACGGCGGAGACCCGTACGCCGCCAACATCGACGCCTCACTGGCAGTTCTAAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATAATCTTCTTCCGAAAGCCCTCCGTTATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTTTGCATCACCCCCGCCGCAGGAGTTGTCCAAGGATGGGCCGCGATTATAATGGGCTTGCTATCAGGATCCATCCCATGGTTCACAATGATGGTGGTTCACAAGAAATCCGCCATCCTCCAAAAGGTGGACGACACAATGGCCGTGTTCCACACCCACGCCATCGCCGGCAGCCTAGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTACTACGGCGCCTACAACAAGTACGTTGGCCTTTTCTACGGCTTCAACTCAAAGCAAGTCAAGCTCGGCTTCCGCCAACTCGGCGTCCAGCTCCTTGGTATCCTCTTCGTCACCCTCATAAACATTATCGTCACTAGCCTTATATGCGTCCTCCTTCAATACATCGTGCCGCTCCGAATGTCCGAGGAGGACATGGCCATCGGCGACGAGGCCGCCCACGGCGAAGAGGCCTATGCTATTTGGGGCCAGGGCGAGAAGATGGACTCTTCTAAGTACGATATTGAAGTCCCGGTTGTGGCCAAGCATAGGCATGCAGGCCATGTTGAAATGGCATGA 1425 55.23 MSLIVPLPSNLLPDPANPEWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLLPFWGKLNVALDQQFLLEQAFSGKLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSAILQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYVGLFYGFNSKQVKLGFRQLGVQLLGILFVTLINIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEVPVVAKHRHAGHVEMA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1964897 1967175 - Carg09318-RA Car05g00341 148727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00341 474 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005887
Car05g00341 474 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005887
Car05g00341 474 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005887
Car05g00341 474 PANTHER AMMONIUM TRANSPORTER MEP2 2 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Car05g00341 474 TIGRFAM amt: ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Car05g00341 474 Gene3D Ammonium transporter AmtB like domains 13 445 IPR029020 -
Car05g00341 474 SUPERFAMILY Ammonium transporter 20 423 - -
Car05g00341 474 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Car05g00341 474 PANTHER AMMONIUM TRANSPORTER 2 473 - -
Car05g00341 474 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00596 Car-Chr3:5586671 Car05g00341 Car-Chr5:1964897 0 dispersed
Car05g00341 Car-Chr5:1964897 Car14g00033 Car-Chr14:203181 0 dispersed
Car05g00341 Car-Chr5:1964897 Car06g00188 Car-Chr6:1131490 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00341 K03320 - csv:101210590 882.093