Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00342 ATGTCGAATCCTCTGTTCCTCTCTGGATTCCTTTTCTCCGTCTTCTTCGCCGCTCACCTCTTCCAATTCTGTCATGGAGACCTCGGCACTGCTACATTCTACACCGCTCCTTATCTACCCACCGCCTGTGCCGGAAAAGATACCTCGGCGTTTCCGGCCAACAACCTGTTTGCGGCGGCCGGAGAAGGAATATGGGAGAATGGAGCGGCATGTGGAAGACAGTACCAAGTGAGGTGCTTCTCTGCCGATGTGCCGAAGTCGTGCGTTCCAGATCAGATTATTCAGGTGACCATCGTGGATCGTGCGATTTCGACGGTGACGAAGCCGGCGAGAGGGGATACGACGATGGTGTTGTCGACGACGGCGTATAAATCCATTGTTCAAAGATCTGTGTCGCTCGTGAACATTGAATTTCGGGAGTGA 423 53.19 MSNPLFLSGFLFSVFFAAHLFQFCHGDLGTATFYTAPYLPTACAGKDTSAFPANNLFAAAGEGIWENGAACGRQYQVRCFSADVPKSCVPDQIIQVTIVDRAISTVTKPARGDTTMVLSTTAYKSIVQRSVSLVNIEFRE 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1969563 1970075 + Carg09317-RA Car05g00342 148728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00342 140 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 140 IPR007112 -
Car05g00342 140 Pfam Lytic transglycolase 62 136 IPR009009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00342 - - - mcha:111004656 194.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00342 Car-Chr5:1969563 Car05g01232 Car-Chr5:11533973 7.83E-46 dispersed
Car12g00298 Car-Chr12:1960767 Car05g00342 Car-Chr5:1969563 5.26E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g399 . . . . . . . . Cmo05g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00342 Cpe11g00347 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002120 3 2 2 2 3 2 3 1 2 2 1 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 1 2 4 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00342 Car_Chr05 FPKM 158.267319 164.987717 228.91864 220.012268 189.894958 228.980057 169.710373 347.962311 378.020111 337.456635