Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00343 ATGGTGGCGGGGCGCGAAGTACCAATTTCGCTCGACGAAGTGAGGGATAAGAACTTGATGCAGCTCAAGAAGCTCAATACAGCCCTCTTCCCTGTTCGCTATAACGAAAAGTACTACGCCGATGTCCTTGCCTCCGGCGACTTCACTAAGCTAGCATACTACAGTGATATATGTGTTGGTTCCATTGCATGTCGCCTTGAGAAGAAAGAACATGGATCTGTTCGTGTCTACATTATGACCCTGGGTGTTCTAGCACCGTACCGTGGACTAGGCATCGGTAGTAAACTGTTAAATCACGTTCTTGATCTCTGCTCAAAGCAAAACATTCCTGAAATCTATTTGCATGTTCAGACGAATAATGATGACGCCATCAAATTCTATACGAAATTCGGGTTTGAGATTACAGAAACCATTCAGAACTATTACGCAAACATTACCCCGCCAGATTGCTATGTTCTTACCAAGTTAATCACTCAAACTCAGACCAAGAAGTAA 495 43.84 MVAGREVPISLDEVRDKNLMQLKKLNTALFPVRYNEKYYADVLASGDFTKLAYYSDICVGSIACRLEKKEHGSVRVYIMTLGVLAPYRGLGIGSKLLNHVLDLCSKQNIPEIYLHVQTNNDDAIKFYTKFGFEITETIQNYYANITPPDCYVLTKLITQTQTKK 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1972553 1976257 - Carg09316-RA Car05g00343 148729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00343 164 PANTHER SUMO-CONJUGATING ENZYME SCE1 2 162 - -
Car05g00343 164 Gene3D - 5 158 - -
Car05g00343 164 PANTHER N-ALPHA-ACETYLTRANSFERASE 2 162 - -
Car05g00343 164 CDD NAT_SF 51 115 - -
Car05g00343 164 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 158 IPR000182 GO:0016407
Car05g00343 164 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 11 156 IPR016181 -
Car05g00343 164 Pfam Acetyltransferase (GNAT) family 51 132 IPR000182 GO:0016407
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00343 K20793 NAA50, NAT5; N-alpha-acetyltransferase 50 [EC:2.3.1.258 2.3.1.309] - csv:101220663 293.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00343 Car09g00480 CCT
Car05g00343 Car09g00480 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00343 Car-Chr5:1972553 Car20g00794 Car-Chr20:4784685 3.87E-09 dispersed
Car12g00297 Car-Chr12:1952589 Car05g00343 Car-Chr5:1972553 3.91E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g350 . . . . . Bpe02g00233 . . Cmo05g00420 . . . Car09g00480 . . . Cpe06g00415 . . . . . . . . . . . . . . . . . . Lsi04g02218 . . . . . . . . . . . . . Cmo09g00538 . . . Car05g00343 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005087 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3546 PF00583 Acetyltransf_1 1.10E-16 CL0257 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00343 Car_Chr05 FPKM 7.317297 9.87303 5.580512 5.754785 6.339199 6.380895 7.452288 5.517418 5.498973 6.376697