Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00344 ATGTCGAGCGCCGTCTTGGTCGCACGCTCTAGCTCCTGGTCTCGTGCTCTCATCAACATCTCTCCGTACACCTTCTCTGCCGTTGGCATCGCCATCGCCATCGGCGTTTCTGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGCGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTTATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAAATCTATGCCCCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTCGTGAAGATTCTTGTAATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTGATCGTCGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 49.18 MSSAVLVARSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1977152 1979601 - Carg09315-RA Car05g00344 148730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00344 182 Gene3D - 23 177 IPR035921 -
Car05g00344 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Car05g00344 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Car05g00344 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Car05g00344 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Car05g00344 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00344 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00344 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00344 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car05g00344 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Car05g00344 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Car05g00344 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Car05g00344 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00344 Car-Chr5:1977152 Car12g00400 Car-Chr12:2556533 1.10E-21 dispersed
Car12g00295 Car-Chr12:1945666 Car05g00344 Car-Chr5:1977152 3.47E-120 wgd
Car04g01259 Car-Chr4:7305690 Car05g00344 Car-Chr5:1977152 1.91E-109 wgd
Car05g00344 Car-Chr5:1977152 Car09g00416 Car-Chr9:2303645 5.09E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00344 K03661 - csv:101221052 328.946