Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00354 ATGGACGGGGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTGATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGTATAAACTTTGCTAGAGATGGGATGCAAGAAAAAGATTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAGTGCGAAAGCTGTTCAATCGAAAGACGAGGATGAGGAAGGCTTGGAAGAGGAAGACGAAGAAGAACATGGAGAAACACTTTGCGGAGCTTGCGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCAGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGCGAATCCGACCCTGA 762 43.31 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSAKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2043992 2049236 + Carg09305-RA Car05g00354 148740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00354 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Car05g00354 253 Pfam PHD-finger 200 249 IPR019787 -
Car05g00354 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Car05g00354 253 SMART PHD_3 199 247 IPR001965 -
Car05g00354 253 MobiDBLite consensus disorder prediction 145 174 - -
Car05g00354 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Car05g00354 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Car05g00354 253 CDD PHD_AL_plant 199 249 IPR044104 -
Car05g00354 253 MobiDBLite consensus disorder prediction 145 193 - -
Car05g00354 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Car05g00354 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Car05g00354 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00354 Car12g00605 CCT
Car05g00354 Car12g00605 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00354 Car-Chr5:2043992 Car17g00661 Car-Chr17:6128488 1.84E-133 dispersed
Car12g00605 Car-Chr12:4025006 Car05g00354 Car-Chr5:2043992 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3547 PF12165 Alfin 2.10E-69 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00354 - - csv:101208889 462.996