Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00364 ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG 423 52.01 MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2096022 2096444 + Carg09295-RA Car05g00364 148750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00364 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00364 Car-Chr5:2096022 Car12g00072 Car-Chr12:309865 7.31E-42 dispersed
Car05g00364 Car-Chr5:2096022 Car04g01382 Car-Chr4:8009972 1.32E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3549 PF00808 CBFD_NFYB_HMF 3.90E-21 CL0012 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00364 - - cmo:103488501 221.09