Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00413 ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA 543 62.25 MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2348747 2349289 + Carg09245-RA Car05g00413 148799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00413 180 Pfam Ring finger domain 115 157 IPR001841 -
Car05g00413 180 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01008 Car-Chr3:8393614 Car05g00413 Car-Chr5:2348747 2.81E-38 dispersed
Car05g00413 Car-Chr5:2348747 Car16g00486 Car-Chr16:3110936 1.85E-34 dispersed
Car05g00413 Car-Chr5:2348747 Car04g00636 Car-Chr4:3635931 2.64E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00413 - - cmos:111462423 309.686