Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00433 ATGGCTGCTGCAGTATTTCACCAATCTCTTGGGACTTTTCTTACCCACGGACAAGCTAATAGTTCAAGTAATTTGTCGAAATCGAATTCGAATTCGAAGTGTTTCAAGGTCGAAGTCGGGGTGTTCAGAAAGATGTCTCCTAGATCTGGCAATATGAATGTAACAGCAATTCAAGCGTCTTCTTCTCAAACTTCAATTTCTGATCCCATTTCATCACCTTCAATCAACACCACTGACGATTCACAGAAAAAACAAAAGGAAGCAGCGTTAATCTTGATTCGGCATGGAGAATCATTGTGGAACGAAAAGAACTTGTTTACTGGCTGTGTTGATGTGCCACTGACCAAGAAAGGTGTGGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGCAATATACCTGTCGATATGATCTATACATCTTCGCTCATTCGTGCACAAATGACTGCCATGCTTGCTATGACTCAGCATCGTCGTAAAAAGGTTCCAGTCATTATTCATAACGAAACCGAGCAGGCAAGGGTCTGGAGTCAAATATTTAGTGAAGAAACCAAAAAACAATCCATCCCAGTAATAGCATCTTGGCGATTGAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAGGAGACTGCTGAAAGGTACGGAAAAGAACAGGTCCACAAATGGCGCCGGAGTTACGATATTCCTCCTCCTAATGGCGAGAGTTTGGAGATGTGTGCAGAGAGAGCTGTTGCTTATTTTAAAGATCAAATTGTACCCCAGCTGCAATCTGGAAAGAATGTAATGATTTCTGCACATGGAAATTCATTGAGGTCCATAATTATGTATCTAGACAAACTAACTTCTCAAGAGGTCATTAGCTTAGAGCTATCGACTGGAATACCCATGCTCTACATATTTAAAGGAGGAAACTTCATTAGGAGGGGAAGTCCTGCAGGACCTTCTGAGGCAGGTGTTTATGCTTATACCAGGGACCTTGCTTCCAATGGCACTGCAACTATTAACGACGTGCTTTTGTGGCAACTCGACTGCAATGAAACAGAAGAAGTTCGCATGAAATTGTAG 1071 42.11 MAAAVFHQSLGTFLTHGQANSSSNLSKSNSNSKCFKVEVGVFRKMSPRSGNMNVTAIQASSSQTSISDPISSPSINTTDDSQKKQKEAALILIRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTQHRRKKVPVIIHNETEQARVWSQIFSEETKKQSIPVIASWRLNERMYGELQGLNKQETAERYGKEQVHKWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLQSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKGGNFIRRGSPAGPSEAGVYAYTRDLASNGTATINDVLLWQLDCNETEEVRMKL 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2480323 2484561 + Carg09225-RA Car05g00433 148819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00433 356 MobiDBLite consensus disorder prediction 58 79 - -
Car05g00433 356 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 87 314 IPR005952 GO:0004619|GO:0006096|GO:0016868
Car05g00433 356 MobiDBLite consensus disorder prediction 58 82 - -
Car05g00433 356 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 92 101 IPR001345 GO:0003824
Car05g00433 356 Pfam Histidine phosphatase superfamily (branch 1) 182 292 IPR013078 -
Car05g00433 356 Pfam Histidine phosphatase superfamily (branch 1) 90 166 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00433 K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] - csv:101211372 558.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00433 Car12g00134 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00398 Car-Chr2:3031924 Car05g00433 Car-Chr5:2480323 4.57E-10 dispersed
Car12g00134 Car-Chr12:762678 Car05g00433 Car-Chr5:2480323 0 wgd
Car05g00433 Car-Chr5:2480323 Car07g00469 Car-Chr7:2364254 4.94E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g380 . . . . . . . . Cmo05g00508 Cmo12g00114 . . . Car12g00134 Sed04g0128 . Cpe07g00121 Bhi04g00738 Tan02g2370 Cmetu03g2087 . Hepe10g0519 . Lcy13g1581 Cla08g01093 Cam08g1546 Cec08g1120 Cco08g1247 Clacu08g1248 . Cre08g1030 . . Cone17ag1233 Cone20ag0492 . . . Cme03g01506 Blo17g00214 . . Bda13g01520 . Bpe14g00345 . Bma02g00272 . . . Cma12g00144 Cma05g00486 Car05g00433 . Cpe11g00425 . . . . . . . . . . . . . . . Lsi08g00949 . Chy03g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002531 1 2 1 1 1 1 3 1 1 2 1 2 3 2 2 3 2 4 3 2 2 2 2 2 1 2 2 1 5 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00433 Car_Chr05 FPKM 9.857266 9.881609 4.857234 4.208501 0.702192 0.739122 0.689147 0.666098 0.559167 0.396264