Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00437 | ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGATTTTCAGTCAGATCCAGTTGGTGGTGAATTAATGGAAGCGCTTGAGCCTTTTATGAAAGCTGCTTCCTCTTCTTCTTCATTTTCTATTCCCGATTTCTCTTTTTCATCTTCGATCCAAACAGAATCCACTTCTTACTCCTCCGATTGTTCTCCTCCGATGATCCATTTGTTTTCCGGTCAAGATTTCCATGGATTAGAGAAATCAGCCTCCATCGGACTTAATTACTTGACGCCCTTTCAGATCCAACAGATCCAATCTCAGTTTGCTCTCCAGACACTGATCCCGCCAGTTTGGGGACAGATTAACAACCAGGTAGCGAGAAATCAGGGGAACGGCGGGAATTTGTTAGCACCGAAGGGGATTTCCATGAAGCAAGTTGGATCTCCACTGAAATCGACGAAGCTTTATCGAGGCGTAAGGCAAAGGCATTGGGGAAAATGGGTGGCCGAGATCCGTCTACCGAGGAACCGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCCTACGATAAAGCCGCTTACAAGCTTCGAGGCGACTTTGCTAGGCTCAATTTCCCTCATCTCAAGCACCATGGCTCCTCCGTCGGCGGTGATTTCGGCGAGTACAAGCCGCTCCACTCCGCCGTCGACGCGAAGCTTGAAGCCATCTGCCAAACCTTGGCGGAGTCGCAGAAACAGGGGAAATCAAACCGAGCCTCATCGAAGAAATCGAAATCATCGAGTTCTTCAACAGTCGAATCAGAGTGTGAAACGCCGACGGTGATTGATCCCGACGAGAATCTGAAAACAGAGGATGCCGGATCGAGTGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGCGACGAGTCGGCAGGGTCTTCGCCTTTGTCAGATCTGACGTTCCCCGATCCGACGGATTCGCCGTGGGAACCGCCGTCGGAAAGCAGTATGCTGCAGAAATATCCGTCGGAAATCGATTGGGCTTCGATCTTCACATCTTGA | 1059 | 50.9 | MAALMDLYGCRDFQSDPVGGELMEALEPFMKAASSSSSFSIPDFSFSSSIQTESTSYSSDCSPPMIHLFSGQDFHGLEKSASIGLNYLTPFQIQQIQSQFALQTLIPPVWGQINNQVARNQGNGGNLLAPKGISMKQVGSPLKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSNRASSKKSKSSSSSTVESECETPTVIDPDENLKTEDAGSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEPPSESSMLQKYPSEIDWASIFTS | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2506940 | 2507998 | + | Carg09221-RA | Car05g00437 | 148823 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00437 | 352 | ProSiteProfiles | AP2/ERF domain profile. | 147 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
| Car05g00437 | 352 | Pfam | AP2 domain | 148 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
| Car05g00437 | 352 | MobiDBLite | consensus disorder prediction | 240 | 340 | - | - | |
| Car05g00437 | 352 | MobiDBLite | consensus disorder prediction | 240 | 268 | - | - | |
| Car05g00437 | 352 | MobiDBLite | consensus disorder prediction | 291 | 320 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00437 | Car12g00137 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00094 | Car-Chr2:600942 | Car05g00437 | Car-Chr5:2506940 | 1.52E-34 | dispersed | |
| Car05g00437 | Car-Chr5:2506940 | Car09g00582 | Car-Chr9:3296296 | 1.58E-101 | dispersed | |
| Car15g00156 | Car-Chr15:856532 | Car05g00437 | Car-Chr5:2506940 | 3.13E-25 | dispersed | |
| Car08g00900 | Car-Chr8:6037984 | Car05g00437 | Car-Chr5:2506940 | 3.08E-35 | transposed | |
| Car12g00137 | Car-Chr12:789433 | Car05g00437 | Car-Chr5:2506940 | 0 | wgd | |
| Car03g00727 | Car-Chr3:6265098 | Car05g00437 | Car-Chr5:2506940 | 6.76E-87 | wgd | |
| Car05g00437 | Car-Chr5:2506940 | Car07g00472 | Car-Chr7:2377497 | 7.86E-83 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3553 | PF00847 | AP2 | 4.60E-15 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00437 | K09286 | - | csv:101222833 | 525.013 |