Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00466 ATGGCGTTGGAAGCGGTGGTTTTCCCACAAGATCCATTTACTTATGTTTGCAGGGATGTCTGTTCTCACGGCGGAGGAGGAGCTTGGGCTGGCTATGATCATGGCTTCCAATTAGAACAACAAAAACCCTTTCTTGGAGTGCCTGAAACTCAAACAGAGGACACAAAATTCGCCGGGAATTGGGAGGCTTCACCGGAGGAATGTTCGATTAATCAGCCTATTCCCGGAGGAGCTCTCTACACGCCGCCGTGTACAGGAAGAAGAAAGCGACGGCGGACACGGAGCACAAAAAACAGAGAGGAAATTGAAAACCAGAGGATGACACATATCGCGGTGGAGCGCAACCGTCGGAAACAAATGAATGAGTATCTAGCGATTCTCCGATCATTAATGCCGTCGTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAGCAACAACTGCAGTTCATCAACACCCATAAGAACACAATCGAAAATGGCGGTTCCCCTTTTGCTGAATTCTTTTCCTTCCCTCAATACTCAACCAAGAACACGGCACATGACTCATCCATTACTCATACCCAGTGGCCGGCCGGTGATATTGAAGTCACCATGATTGATACCCATGCCAACCTTAAAATACTGTCGCCAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTCACTGTTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTTTATTCTCTAAGCATTAAGGTTGAAGAAGGGTGTCAGTTGAATACAGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTGCTGTTCATTCAAGAGGAAGCTGCTTTAAATTGA 879 45.73 MALEAVVFPQDPFTYVCRDVCSHGGGGAWAGYDHGFQLEQQKPFLGVPETQTEDTKFAGNWEASPEECSINQPIPGGALYTPPCTGRRKRRRTRSTKNREEIENQRMTHIAVERNRRKQMNEYLAILRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFINTHKNTIENGGSPFAEFFSFPQYSTKNTAHDSSITHTQWPAGDIEVTMIDTHANLKILSPKRPRQLLKMVAGFQSLRLTVLHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLFIQEEAALN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2652809 2654231 - Carg08207-RA Car05g00466 148852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00466 292 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 292 - -
Car05g00466 292 PANTHER MAX DIMERIZATION, MAD 1 292 - -
Car05g00466 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 172 IPR036638 GO:0046983
Car05g00466 292 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Car05g00466 292 Gene3D - 98 168 IPR036638 GO:0046983
Car05g00466 292 CDD bHLH_AtFAMA_like 107 176 - -
Car05g00466 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Car05g00466 292 SMART finulus 110 161 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00466 - - - csv:101218813 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01378 Car-Chr2:9090290 Car05g00466 Car-Chr5:2652809 6.63E-68 dispersed
Car05g00466 Car-Chr5:2652809 Car05g01086 Car-Chr5:10408735 2.81E-90 dispersed
Car10g00928 Car-Chr10:7168992 Car05g00466 Car-Chr5:2652809 4.17E-24 dispersed
Car12g00613 Car-Chr12:4150865 Car05g00466 Car-Chr5:2652809 1.10E-55 transposed
Car12g00206 Car-Chr12:1299052 Car05g00466 Car-Chr5:2652809 8.01E-151 wgd
Car05g00466 Car-Chr5:2652809 Car07g00506 Car-Chr7:2559697 4.18E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g459 . . . . . . . . Cmo05g00543 . . . . . Sed08g1674 . . Bhi04g00791 Tan02g2427 Cmetu03g0550 . Hepe10g0469 . Lcy13g1533 Cla08g01134 Cam08g1591 Cec08g1161 Cco08g1287 Clacu08g1291 . Cre08g1073 Cone4ag1316 Cone7ag1260 Cone17ag1201 Cone20ag0528 . . . Cme03g01839 . . . . . . . . . . . . Cma05g00515 Car05g00466 . Cpe11g00455 . . . . . . . . . . . . . . . Lsi08g00990 Csa02g02175 Chy03g01342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010750 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3555 PF00010 HLH 2.50E-10 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00466 Car_Chr05 FPKM 3.382504 3.671621 4.706893 4.526906 8.408282 8.989138 9.153095 4.582234 3.883718 4.943827