Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00471 ATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAATTACTCTCATCTGTAGGAGGGTCGTCCATTGATCCCCGGCTCCCGCTCGGAAAAGTTTCATCGTCACGCCAATTTTTTTCTTGTGCCCGAGTGTTGCAATCATGTTCTTCTGCCGTCGGTAAAGCTCCTGACTTCGCCACAGGATTTCCGGCGAGTAGATGTTTCATACATGCCACAGGTTCATGTCATTCTATTGAACGAGATTACTACGAAATTCTCGGGGTTCAACACAATGCCAGTCGAGAAGAGATTAAGAAGGCATACCATGCGTTGGCCAAAAAGTACCATCCGGATGCAAACAAGAACAATCCTTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTACAGGATTCTGAGAAGAGATCCCAATATGACCAGGTGGCAACTCCTAAATTACTAGAGACATATTCTATAGCTTCTGCTGCTTGTGCCACTTTTCTTCTTATTTGTTTATTTAGGCGTGGTGGAGAATTTGAAAATGCAGGTTTTGGTACTGGTGACGCAGATGGGTTTAGCTATACTTATCGAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTGCCTCAGATATTCAGGTTGCCCTGTCATTATCTTTTACAGAAGCTGCTAAAGGATGCACAAAGCATTTGTCCTTTGATGCTATGGTTCCCTGTGATTCTTGCTATGGGCGTGGCTTTCCAGTGAATGCAACGAAAAGAAGCTGCCCTACTTGCAGAGGTTTAGGTAGGGTTACTATTCCTCCATTTACATCAACATGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGGAATTATGTGTGGAATGCAGGGGAATGGGGGTTGTGGCGGGTGTCAAGGAGGGGTTGATTCTGGAGATACCATTCGTGTACCAGAAGCTGGTAGTAGCGGTGGACGAGAAAGTTGCTGAAGATCGTGTCTTTAAGAGGGATGGTGTGGACATTTATGTGGATTCTCATGTCAGCTTTACTCAAGCTATTCTTGGTGGCAAGGTTGAGGTTCCAACGTTGTCAGGCAAGATAGAAATAAATATACCAAAAGGCGTTCAGCCGGGACAGCTCTTAATACTGAGAGGGAAAGGATTGCCAAAACATGGACTTTTTGTTGATCGTGGAGATCAATATGTGCGCTTCCGTATTAAATTTCCCACTGAAATAAATGAACGACAACGTGCCATTTTGGAAGAGTTTGCTGAAGAAGAAATAAAGAATGGGATTGACAACTCAGATGAAGCAATACCCGAGTTGCTGTTTCAAATTCGCGAAGATTATCCAAGTTACACTTGTTTGGAAAATTTATATAGATATTACAACAAGTAG 1407 43.71 MKRLGWLGLCRRQLLSSVGGSSIDPRLPLGKVSSSRQFFSCARVLQSCSSAVGKAPDFATGFPASRCFIHATGSCHSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQVATPKLLETYSIASAACATFLLICLFRRGGEFENAGFGTGDADGFSYTYRTHFSDSFQKIFSEIFEHETSRFASDIQVALSLSFTEAAKGCTKHLSFDAMVPCDSCYGRGFPVNATKRSCPTCRGLGRVTIPPFTSTCTTCKGSGQIIKELCVECRGMGVVAGVKEGLILEIPFVYQKLVVAVDEKVAEDRVFKRDGVDIYVDSHVSFTQAILGGKVEVPTLSGKIEINIPKGVQPGQLLILRGKGLPKHGLFVDRGDQYVRFRIKFPTEINERQRAILEEFAEEEIKNGIDNSDEAIPELLFQIREDYPSYTCLENLYRYYNK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2677612 2688310 - Carg08213-RA Car05g00471 148857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00471 468 Pfam DnaJ C terminal domain 220 412 IPR002939 -
Car05g00471 468 Pfam DnaJ central domain 247 303 IPR001305 GO:0031072|GO:0051082
Car05g00471 468 Hamap Chaperone protein DnaJ [dnaJ]. 78 452 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Car05g00471 468 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Car05g00471 468 Pfam DnaJ domain 81 143 IPR001623 -
Car05g00471 468 ProSiteProfiles Zinc finger CR-type profile. 234 308 IPR001305 GO:0031072|GO:0051082
Car05g00471 468 ProSiteProfiles dnaJ domain profile. 81 146 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00471 - - - csv:101208756 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00471 Car-Chr5:2677612 Car08g00458 Car-Chr8:2941155 2.35E-69 dispersed
Car05g00471 Car-Chr5:2677612 Car17g00893 Car-Chr17:7424077 1.20E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00471 Car_Chr05 FPKM 7.755679 8.984949 10.288754 9.744538 10.918576 10.581862 12.046439 11.705908 11.627591 12.169949