Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00476 ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTTCGCCGCCGACCGGTGAGGGTTCATCGGAGGCGAGGAAAACCGGAGGCGGCGGAGTAGGAGGAGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTTTACCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACACCAACATCATCAGTTTTCTTATCGTGGACCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCGGGGAGGGAGGAGGAAGATAATACATCTAATCCAAGCAGTAGCGGCGGCGGAGGCGGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGGACCACCGGTGTCCGGCGGCAGGTGCTCAAGGTTTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG 741 52.36 MDFDEEHDDQDDEVIEEMPIAHHFDATSPPTGEGSSEARKTGGGGVGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGGGGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2706441 2707181 - Carg08218-RA Car05g00476 148862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00476 246 MobiDBLite consensus disorder prediction 149 179 - -
Car05g00476 246 MobiDBLite consensus disorder prediction 157 171 - -
Car05g00476 246 MobiDBLite consensus disorder prediction 1 49 - -
Car05g00476 246 MobiDBLite consensus disorder prediction 1 15 - -
Car05g00476 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
Car05g00476 246 Pfam ZF-HD protein dimerisation region 55 107 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00476 - - - csv:101216697 344.739
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00680 Car-Chr3:6018644 Car05g00476 Car-Chr5:2706441 1.02E-56 dispersed
Car04g00784 Car-Chr4:4530244 Car05g00476 Car-Chr5:2706441 9.02E-58 dispersed
Car04g02663 Car-Chr4:20741567 Car05g00476 Car-Chr5:2706441 1.42E-19 dispersed
Car05g00476 Car-Chr5:2706441 Car07g00499 Car-Chr7:2500572 1.99E-67 dispersed
Car12g00201 Car-Chr12:1262779 Car05g00476 Car-Chr5:2706441 3.95E-68 wgd
Car03g00761 Car-Chr3:6404186 Car05g00476 Car-Chr5:2706441 3.70E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3556 PF04770 ZF-HD_dimer 2.60E-29 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00476 Car_Chr05 FPKM 0.659794 0.808689 0.758916 0.677774 2.004031 2.18334 2.026262 0.813615 0.900586 0.955391