Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00476 | ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTTCGCCGCCGACCGGTGAGGGTTCATCGGAGGCGAGGAAAACCGGAGGCGGCGGAGTAGGAGGAGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTTTACCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACACCAACATCATCAGTTTTCTTATCGTGGACCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCGGGGAGGGAGGAGGAAGATAATACATCTAATCCAAGCAGTAGCGGCGGCGGAGGCGGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGGACCACCGGTGTCCGGCGGCAGGTGCTCAAGGTTTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG | 741 | 52.36 | MDFDEEHDDQDDEVIEEMPIAHHFDATSPPTGEGSSEARKTGGGGVGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGGGGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2706441 | 2707181 | - | Carg08218-RA | Car05g00476 | 148862 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00476 | 246 | MobiDBLite | consensus disorder prediction | 149 | 179 | - | - | |
| Car05g00476 | 246 | MobiDBLite | consensus disorder prediction | 157 | 171 | - | - | |
| Car05g00476 | 246 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Car05g00476 | 246 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Car05g00476 | 246 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 57 | 106 | IPR006456 | - | |
| Car05g00476 | 246 | Pfam | ZF-HD protein dimerisation region | 55 | 107 | IPR006456 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00680 | Car-Chr3:6018644 | Car05g00476 | Car-Chr5:2706441 | 1.02E-56 | dispersed | |
| Car04g00784 | Car-Chr4:4530244 | Car05g00476 | Car-Chr5:2706441 | 9.02E-58 | dispersed | |
| Car04g02663 | Car-Chr4:20741567 | Car05g00476 | Car-Chr5:2706441 | 1.42E-19 | dispersed | |
| Car05g00476 | Car-Chr5:2706441 | Car07g00499 | Car-Chr7:2500572 | 1.99E-67 | dispersed | |
| Car12g00201 | Car-Chr12:1262779 | Car05g00476 | Car-Chr5:2706441 | 3.95E-68 | wgd | |
| Car03g00761 | Car-Chr3:6404186 | Car05g00476 | Car-Chr5:2706441 | 3.70E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3556 | PF04770 | ZF-HD_dimer | 2.60E-29 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00476 | - | - | csv:101216697 | 344.739 |