Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00478 ATGGCGCCTTATTATCTTAAAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATCAGCGATGAATGCTTGATTGAAATGGTTAAGAAGGAAACCCATCACTTGCCTCTTGATGGGTACCTCGGGAAGTTCCACAACGGCGACTTGGATGTCCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAACTACTTGGATCGCTTCCTTTCTGCTTATGATCTACCCAAAGGCAAAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCGCTCTCGTTGGATTTACAGGTGGGTGGATCGAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACACCTTTCTCGTTTATCGATCATTACCTCCGAAAGATCCACGACGACGAATTCTCTCTCGAAATGTCAATCGGGCAATCGTGTCATCTACTCTTGAACATAATACATGGTATCGAGTTCTTGGAATTCAAACCGTCGGAGATTGCAGCAGCTGTGGCGATATCGGTCGCGGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAGCTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACATGTTCGTCTGCCGGGGTGGGTCGGGGAAGGGCTCGAGAGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCGGGGTGTTGGAGGTGACATGCTTGAGCTATACAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCAGATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGA 948 47.57 MAPYYLKTHRNRSHRRGASDGLPFISDECLIEMVKKETHHLPLDGYLGKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHDDEFSLEMSIGQSCHLLLNIIHGIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMFVCRGGSGKGSRASMSSERRSPSGVLEVTCLSYTSNDTAVGSCANSDATKRRRLNRPCEVNF 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2720856 2722449 - Carg08221-RA Car05g00478 148864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00478 315 Pfam Cyclin, C-terminal domain 162 257 IPR004367 -
Car05g00478 315 Pfam Cyclin, N-terminal domain 33 159 IPR006671 -
Car05g00478 315 ProSitePatterns Cyclins signature. 60 91 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00478 Car-Chr5:2720856 Car07g00501 Car-Chr7:2508069 9.40E-92 dispersed
Car12g00196 Car-Chr12:1241291 Car05g00478 Car-Chr5:2720856 1.68E-144 wgd
Car03g00762 Car-Chr3:6407386 Car05g00478 Car-Chr5:2720856 7.52E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00478 K18810 - csv:101216206 509.22