Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00483 ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACTCCCGACTGCGGTGACACCGGCGAGGCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGTAGCGATGGTTCAAGCCAGCTCACTCTTTCATTCCGTGGCCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCCAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTATATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAGGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTTGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCGAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCACCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGCGGCGGAGATTTTATGGATGATGTCGAAGGGGCCCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTAGTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTACCATACGATGATAACAACAGGGGTATGTTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGCGTTAGCGAGAACAATACACCTGCAATGCGTCGAGGGCCTGCTGGACCTCGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCAGTTGAGGAAGATACAAATGAAACCACTTTAGAGCTTACAAATTCGTTGCCCAAGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGATGGATGATGATAACATAAGGGGTCAGGTCGTAAGCATGATAGCACATTGA 1875 49.71 MYGRAEPLTMGDQIASTPDCGDTGEALDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQPSVDLVNQNQRNAIDLPGRSSQPQRAASLYRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGLYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPATEQCESDAAKDFDCRRGNHAPSNLPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGGGDFMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVSPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMFDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDTNETTLELTNSLPKQIANHSTNGDEQMDDDNIRGQVVSMIAH 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2782368 2799591 - Carg08226-RA Car05g00483 148869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00483 624 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Car05g00483 624 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Car05g00483 624 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 ProSiteProfiles CCT domain profile. 410 452 IPR010402 GO:0005515
Car05g00483 624 ProSitePatterns GATA-type zinc finger domain. 481 508 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 MobiDBLite consensus disorder prediction 565 604 - -
Car05g00483 624 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 Pfam GATA zinc finger 481 517 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 ProSiteProfiles GATA-type zinc finger domain profile. 205 260 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 ProSiteProfiles GATA-type zinc finger domain profile. 475 523 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 MobiDBLite consensus disorder prediction 187 201 - -
Car05g00483 624 Pfam CCT motif 410 451 IPR010402 GO:0005515
Car05g00483 624 Pfam CCT motif 138 180 IPR010402 GO:0005515
Car05g00483 624 ProSiteProfiles Tify domain profile. 342 377 IPR010399 -
Car05g00483 624 MobiDBLite consensus disorder prediction 551 612 - -
Car05g00483 624 Pfam tify domain 73 105 IPR010399 -
Car05g00483 624 Pfam tify domain 345 376 IPR010399 -
Car05g00483 624 MobiDBLite consensus disorder prediction 171 203 - -
Car05g00483 624 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00483 Car-Chr5:2782368 Car11g01171 Car-Chr11:9390946 7.95E-64 dispersed
Car12g00188 Car-Chr12:1159979 Car05g00483 Car-Chr5:2782368 0 wgd
Car19g00359 Car-Chr19:5475519 Car05g00483 Car-Chr5:2782368 9.63E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3557 PF06203 CCT 2.80E-13 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00483 - - mcha:111004894 563.148