Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00483 ATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACTCCCGACTGCGGTGACACCGGCGAGGCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCGCTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGTAGCGATGGTTCAAGCCAGCTCACTCTTTCATTCCGTGGCCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCCAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTATATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAGGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTTGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGACCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCGAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCACCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGCGGCGGCGGCGGAGATTTTATGGATGATGTCGAAGGGGCCCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTCATGGCGTCTAGAACTAGTGAGCTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTAGTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTACCATACGATGATAACAACAGGGGTATGTTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTCGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGCGTTAGCGAGAACAATACACCTGCAATGCGTCGAGGGCCTGCTGGACCTCGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCAGTTGAGGAAGATACAAATGAAACCACTTTAGAGCTTACAAATTCGTTGCCCAAGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGATGGATGATGATAACATAAGGGGTCAGGTCGTAAGCATGATAGCACATTGA 1875 49.71 MYGRAEPLTMGDQIASTPDCGDTGEALDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQPSVDLVNQNQRNAIDLPGRSSQPQRAASLYRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGLYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPATEQCESDAAKDFDCRRGNHAPSNLPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGGGGGDFMDDVEGAHMTSVSVVKHGGLVMASRTSELTLSFEGEVYVFPAVSPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMFDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDTNETTLELTNSLPKQIANHSTNGDEQMDDDNIRGQVVSMIAH 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2782368 2799591 - Carg08226-RA Car05g00483 148869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00483 624 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Car05g00483 624 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Car05g00483 624 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 ProSiteProfiles CCT domain profile. 410 452 IPR010402 GO:0005515
Car05g00483 624 ProSitePatterns GATA-type zinc finger domain. 481 508 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 MobiDBLite consensus disorder prediction 565 604 - -
Car05g00483 624 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 Pfam GATA zinc finger 481 517 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 ProSiteProfiles GATA-type zinc finger domain profile. 205 260 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 ProSiteProfiles GATA-type zinc finger domain profile. 475 523 IPR000679 GO:0006355|GO:0043565
Car05g00483 624 MobiDBLite consensus disorder prediction 187 201 - -
Car05g00483 624 Pfam CCT motif 410 451 IPR010402 GO:0005515
Car05g00483 624 Pfam CCT motif 138 180 IPR010402 GO:0005515
Car05g00483 624 ProSiteProfiles Tify domain profile. 342 377 IPR010399 -
Car05g00483 624 MobiDBLite consensus disorder prediction 551 612 - -
Car05g00483 624 Pfam tify domain 73 105 IPR010399 -
Car05g00483 624 Pfam tify domain 345 376 IPR010399 -
Car05g00483 624 MobiDBLite consensus disorder prediction 171 203 - -
Car05g00483 624 MobiDBLite consensus disorder prediction 171 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00483 - - - mcha:111004894 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00483 Car-Chr5:2782368 Car11g01171 Car-Chr11:9390946 7.95E-64 dispersed
Car12g00188 Car-Chr12:1159979 Car05g00483 Car-Chr5:2782368 0 wgd
Car19g00359 Car-Chr19:5475519 Car05g00483 Car-Chr5:2782368 9.63E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car17g00183 CST 1 180 Tify Gene Family AT4G14713 52.1 4.0e-45 178.7
Car08g01006 CST 1 180 Tify Gene Family AT4G14713 52.1 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3557 PF06203 CCT 2.80E-13 CL0281 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00483 Car_Chr05 FPKM 50.60099 50.431763 107.343895 110.179337 50.920853 44.481178 48.61031 98.796738 93.008995 102.279465