Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00509 ATGAGAACCTCCGTGGGAGAGCTTGAGAGAGAGAGAGAGAGAGAGAGAGCGATGGAGCTCGACGAGCACGTTTTCTTAGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAACTTAGCGATCTCTGTTGGAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCGGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCCGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGACGATTCCGCCTATACCGCCATGGAAGTAGCAGCGACGCCTCTGCCATTTCAAGGAGAACGTCCGAATGCGGAACGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTTGTGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACGAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCGAAGAATCTAATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGATGGATCAAATCCGAGCACGAATTCATTGAACAACACAAAACCGAGCGAATTGATAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGTGAAGCCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAAATGAAGCAGAGAACAGAACTGAAGCCTGAAGAACTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGGGGAAGCTGCTTGTAG 1062 47.27 MRTSVGELERERERERAMELDEHVFLEELMALRRDSNWDAIPNELSDLCWNAWAFDYCFDQSGMNFHPNSSSEPLSAQNLDEFYHPLGNEFSVPGMDDSAYTAMEVAATPLPFQGERPNAEREGEGEEEEELGFLVDEIQNMEVVQVQSACKMEPNQSPELPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDGSNPSTNSLNNTKPSELIARNSPKFEVESRMGKTRIEICCAVKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRTELKPEELKEALFRNAGYGGSCL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2951105 2953232 + Carg08252-RA Car05g00509 148895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00509 353 Coils Coil 222 242 - -
Car05g00509 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Car05g00509 353 Pfam Helix-loop-helix DNA-binding domain 189 232 IPR011598 GO:0046983
Car05g00509 353 MobiDBLite consensus disorder prediction 174 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00509 Car09g00538 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01234 Car-Chr4:7104038 Car05g00509 Car-Chr5:2951105 1.58E-101 dispersed
Car05g00509 Car-Chr5:2951105 Car11g01271 Car-Chr11:10604990 5.49E-41 dispersed
Car12g00162 Car-Chr12:929971 Car05g00509 Car-Chr5:2951105 5.70E-178 wgd
Car03g00782 Car-Chr3:6511291 Car05g00509 Car-Chr5:2951105 3.92E-85 wgd
Car05g00509 Car-Chr5:2951105 Car07g00521 Car-Chr7:2631738 4.66E-65 wgd
Car05g00509 Car-Chr5:2951105 Car09g00538 Car-Chr9:3044325 6.34E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3560 PF00010 HLH 6.70E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00509 - - csv:101221329 518.464